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[176028_at]

Description ZK112.5 /REP_DB=WormBase Gene ID /WP=CE00376 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 08      6grp_high1_10_10 > 80      4grp_highest_8_8 > 23      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 72      4grp_total > 03      6grp_high1_sub > 02_03_04_05      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 432
1 2 3 4 range
A 75.7
(-3)
P 		94.8
(-2.5)
P 		74.3
(-3)
P 		344.9
(3)
P 		271
B 74.6
(-2.2)
P 		65.4
(-2.4)
P 		34.5
(-3)
P 		349.6
(3)
P 		315
C 112.7
(-2.2)
P 		88.3
(-2.5)
P 		56.9
(-3)
P 		466.8
(3)
P 		410
avr 87.7
(-2.4) 		82.8
(-2.5) 		55.2
(-3) 		387.1
(3) 		332

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 83.7
(-2.1)
P 		91.2
(-1.4)
P 		105.2
(0)
P 		135.2
(3)
P 		88.6
(-1.6)
P 		74.9
(-3)
P 		60
B 99.6
(-0.5)
P 		102.1
(-0.1)
P 		123.7
(3)
P 		82
(-3)
P 		116.4
(1.9)
P 		89.7
(-1.9)
P 		42
C 74.6
(-2)
P 		108.9
(3)
P 		88.1
(-0)
P 		76.3
(-1.8)
P 		104.3
(2.3)
P 		67.8
(-3)
P 		41
avr 86
(-1.2) 		100.7
(1.9) 		105.7
(3) 		97.8
(1.3) 		103.1
(2.4) 		77.5
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 27.6
(-1.4)
P 		20.6
(-2.8)
P 		19.4
(-3)
P 		50.5
(3)
P 		31
B 23.8
(-1.6)
P 		16.1
(-2.3)
P 		8
(-3)
P 		74.5
(3)
P 		67
C 37.3
(-1.2)
P 		25.4
(-2.4)
P 		19.8
(-3)
P 		78.7
(3)
P 		59
avr 29.6
(-1.4) 		20.7
(-2.4) 		15.7
(-3) 		67.9
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 15.4
(-3)
P 		32.4
(2.4)
P 		22.9
(-0.6)
P 		34.3
(3)
P 		26.7
(0.6)
P 		18.2
(-2.1)
P 		19
B 34.7
(0)
P 		34
(-0.1)
P 		30
(-1.1)
P 		21.7
(-3)
P 		47.3
(3)
P 		33.5
(-0.2)
P 		26
C 27.6
(1)
P 		33.2
(2.8)
P 		22.4
(-0.7)
P 		15.3
(-3)
P 		33.7
(3)
P 		22.7
(-0.6)
P 		18
avr 25.9
(-2) 		33.2
(1.7) 		25.1
(-2.4) 		23.8
(-3) 		35.9
(3) 		24.8
(-2.5) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176028_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7643
Sequence Type Exemplar sequence
Representative Public ID ZK112.5 NCBI
Target Description ZK112.5 /REP_DB=WormBase Gene ID /WP=CE00376 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066284 NCBI Caenorhabditis elegans ZK112.5 (ZK112.5) mRNA, complete cds. 11/11 None
SNAP00000003595 ENSEMBL cdna:SNAP chromosome:CEL140:III:7738021:7740464:-1 11/11 None
GENEFINDER00000003618 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7738080:7740464:-1 9/11 None
ZK112.5 ENSEMBL cdna:known chromosome:CEL140:III:7738021:7739579:-1 gene:ZK112.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7738018-7739577(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK112.5
Entrez Gene 191228 Entrez gene
SwissProt P34614 EMBL-EBI
WormBase CE00376 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE66869 Hypothetical protein CBG12246 [Caenorhabditis briggsae] 1.0E-115
blast CAE66869 Hypothetical protein CBG12246 [Caenorhabditis briggsae] 1.0E-105
blast AAA28184 Hypothetical protein ZK112.5 [Caenorhabditis elegans] ref|NP_498685.1| ZK112.5 [Caenorhabditis elegans] sp|P34614|YOG5_CAEEL Hypothetical protein ZK112.5 in chromosome III 3.0E-87
blast AAA28184 Hypothetical protein ZK112.5 [Caenorhabditis elegans] ref|NP_498685.1| ZK112.5 [Caenorhabditis elegans] sp|P34614|YOG5_CAEEL Hypothetical protein ZK112.5 in chromosome III 2.0E-86
blast AAA28184 Hypothetical protein ZK112.5 [Caenorhabditis elegans] ref|NP_498685.1| ZK112.5 [Caenorhabditis elegans] sp|P34614|YOG5_CAEEL Hypothetical protein ZK112.5 in chromosome III 2.0E-59
blast CAE66869 Hypothetical protein CBG12246 [Caenorhabditis briggsae] 8.0E-43
blast AAA28183 Hypothetical protein ZK112.6 [Caenorhabditis elegans] ref|NP_498686.1| ZK112.6 [Caenorhabditis elegans] sp|P34615|YOG6_CAEEL Hypothetical protein ZK112.6 in chromosome III 4.0E-26
Sequence
Target Sequence 
>C. ELEGANS:176028_AT
aagcggagctactcgaatcgttggaatctcgaaaattgggtctcgaaacgagagttctcg
acaagtatcacgaaaaccacgtggctttcgagaatgttttggttttggatgctccgcaag
acttggagacaattgtcaatttacttctgccatggtatatgggaaagacattaacattgt
tcgaaggacctttgaattacccggactcgtctcgtcttgcacaaattatttcaaagcaca
atgttgatattgttctcggctcggactacaactacagtatcccaaatccggaatatctca
aattattccctgttccttcgctgaaacttgttgatcttcccaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCGGAGCTACTCGAATCGTTGGA 498 143 110 Antisense
AAAACCACGTGGCTTTCGAGAATGT 173 129 182 Antisense
GGTTTTGGATGCTCCGCAAGACTTG 256 507 210 Antisense
AATTGTCAATTTACTTCTGCCATGG 520 179 240 Antisense
ACTCGTCTCGTCTTGCACAAATTAT 646 99 314 Antisense
TGATATTGTTCTCGGCTCGGACTAC 388 563 354 Antisense
GGCTCGGACTACAACTACAGTATCC 279 539 367 Antisense
CAGTATCCCAAATCCGGAATATCTC 332 207 384 Antisense
TATCTCAAATTATTCCCTGTTCCTT 150 659 403 Antisense
CCTGTTCCTTCGCTGAAACTTGTTG 275 267 418 Antisense
GCTGAAACTTGTTGATCTTCCCAAT 70 297 429 Antisense
Sequence Source Affymetrix Proprietary Database