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[176027_at]

Description Y55F3C.E /REP_DB=WormBase Gene ID /WP=CE22563 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 35      4grp_total > 06      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 89
1 2 3 4 range
A 34.7
(-1.4)
A 		12.5
(-3)
A 		15.5
(-2.8)
A 		98.3
(3)
A 		86
B 43.7
(1.4)
A 		20.2
(-1.6)
A 		55.7
(3)
A 		9.7
(-3)
A 		46
C 66.4
(2.9)
A 		57.4
(1.3)
A 		33.3
(-3)
A 		66.7
(3)
A 		33
avr 48.3
(0.9) 		30
(-3) 		34.8
(-2) 		58.2
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 40.6
(0.9)
A 		56.1
(3)
A 		11.4
(-3)
A 		46
(1.6)
A 		37.4
(0.5)
A 		39.6
(0.8)
A 		45
B 34.2
(-0.4)
A 		45.8
(0.8)
A 		66.2
(3)
A 		9.5
(-3)
A 		36.1
(-0.2)
A 		38.8
(0.1)
A 		57
C 44.1
(1.3)
A 		46.7
(1.6)
A 		58.7
(3)
A 		34.5
(0.1)
A 		7.8
(-3)
A 		24.8
(-1)
A 		51
avr 39.6
(0.3) 		49.5
(3) 		45.4
(1.9) 		30
(-2.2) 		27.1
(-3) 		34.4
(-1) 		22
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 12.6
(2.1)
A 		2.7
(-3)
A 		4
(-2.3)
A 		14.4
(3)
A 		12
B 13.9
(3)
A 		5
(-1.5)
A 		12.9
(2.5)
A 		2.1
(-3)
A 		12
C 22
(3)
A 		16.5
(-0.1)
A 		11.6
(-2.8)
A 		11.3
(-3)
A 		11
avr 16.2
(3) 		8.1
(-3) 		9.5
(-2) 		9.3
(-2.1) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 7.5
(-1.3)
A 		19.9
(3)
A 		2.5
(-3)
A 		11.7
(0.2)
A 		11.3
(0)
A 		9.6
(-0.6)
A 		17
B 11.9
(1.1)
A 		15.2
(2.6)
A 		16.1
(3)
A 		2.5
(-3)
A 		14.6
(2.3)
A 		14.5
(2.3)
A 		14
C 16.3
(3)
A 		14.3
(2.1)
A 		14.9
(2.4)
A 		6.9
(-1.1)
A 		2.5
(-3)
A 		8.3
(-0.5)
A 		14
avr 11.9
(0.1) 		16.5
(3) 		11.2
(-0.3) 		7
(-3) 		9.5
(-1.4) 		10.8
(-0.6) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176027_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19233
Sequence Type Exemplar sequence
Representative Public ID Y55F3C.E NCBI
Target Description Y55F3C.E /REP_DB=WormBase Gene ID /WP=CE22563 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000015019 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:736747:738791:1 None
SNAP00000015006 ENSEMBL cdna:SNAP chromosome:CEL140:IV:736747:738127:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:736404-738133(+) 99.13 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86309 Hypothetical protein Y55F3C.4 [Caenorhabditis elegans] 4.0E-36
blast AAY86309 Hypothetical protein Y55F3C.4 [Caenorhabditis elegans] 8.0E-36
blast CAE65651 Hypothetical protein CBG10714 [Caenorhabditis briggsae] 7.0E-34
blast CAE65651 Hypothetical protein CBG10714 [Caenorhabditis briggsae] 9.0E-34
Sequence
Target Sequence 
>C. ELEGANS:176027_AT
aatttcgatacaacgctactccttctttcaataaaaatttcaacaaaaattttctctcaa
atttctcatcaaaaatcaataatcatgtagatcaggtgtgtgagtgtgtgaacatacgaa
atctaaaacctcaaacatgccccccactcttcccacatcatgtcatcatatcagtcaatc
attcacacacgtttttccgatatttctttcggtctcggacattgagatctgctcttcctc
ttctcaaagtgctccaccctgattattacgttaacacttgtctgtgttgtgaacctcatt
catcattattcaggcggagaatgctttcttcaactggaagaagcttcactccacttgatg
gatcaaatggaacgagttcgagaaggaatccttttgttcaggtgacttctaccgattcat
gccatctcccagatcgaccagtgctcaacactccaccaatatcttcgcgtgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTTCGATACAACGCTACTCCTTC 306 175 41 Antisense
CTCTTCCCACATCATGTCATCATAT 521 229 187 Antisense
CAATCATTCACACACGTTTTTCCGA 330 181 216 Antisense
GATATTTCTTTCGGTCTCGGACATT 635 425 239 Antisense
CGGACATTGAGATCTGCTCTTCCTC 301 243 256 Antisense
TGCTCCACCCTGATTATTACGTTAA 365 577 290 Antisense
TTGTCTGTGTTGTGAACCTCATTCA 699 705 318 Antisense
GGCGGAGAATGCTTTCTTCAACTGG 416 541 353 Antisense
GAAGCTTCACTCCACTTGATGGATC 299 341 380 Antisense
TCAGGTGACTTCTACCGATTCATGC 53 623 438 Antisense
ACACTCCACCAATATCTTCGCGTGT 683 109 488 Antisense
Sequence Source Affymetrix Proprietary Database