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[176026_at]

Description C06E1.3 /REP_DB=WormBase Gene ID /WP=CE00058 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 19      6grp_high1_10_10 > 91      6grp_highest_nonorm > 90      6grp_total > 92      4grp_total > 58      6grp_highest_sub > 05      6grp_high1_sub > 05      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 175
1 2 3 4 range
A 91
(-1.6)
P 		165.5
(2.3)
P 		180.1
(3)
P 		63.3
(-3)
A 		117
B 94.9
(-1)
P 		212
(3)
P 		202.4
(2.7)
P 		36.7
(-3)
A 		175
C 153.3
(0.9)
P 		196.4
(3)
P 		161.8
(1.3)
P 		71
(-3)
A 		125
avr 113.1
(-0.5) 		191.3
(3) 		181.4
(2.6) 		57
(-3) 		134

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 215
1 2 3 4 5 6 range
A 113.6
(-1.7)
P 		178.2
(0.1)
P 		94.3
(-2.2)
P 		161.5
(-0.4)
P 		281.9
(3)
P 		66.5
(-3)
P 		215
B 110.9
(-2.4)
P 		136
(-1.5)
P 		117
(-2.2)
P 		157.3
(-0.7)
P 		260.6
(3)
P 		93.6
(-3)
P 		167
C 106.5
(-3)
P 		168.4
(0.9)
P 		130.1
(-1.5)
P 		186
(2)
P 		202.6
(3)
P 		112
(-2.7)
P 		96
avr 110.3
(-2.3) 		160.9
(-0.3) 		113.8
(-2.1) 		168.3
(-0) 		248.4
(3) 		90.7
(-3) 		158
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 33.1
(0.8)
P 		35.9
(1.2)
P 		47.1
(3)
P 		9.3
(-3)
A 		38
B 30.3
(0)
P 		52.3
(3)
P 		46.9
(2.3)
P 		7.8
(-3)
A 		45
C 50.8
(2.2)
P 		56.5
(3)
P 		56.4
(3)
P 		12
(-3)
A 		45
avr 38.1
(1.2) 		48.2
(2.7) 		50.1
(3) 		9.7
(-3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 20.9
(-2.6)
P 		63.4
(1.1)
P 		20.5
(-2.6)
P 		41
(-0.8)
P 		85.1
(3)
P 		16.2
(-3)
P 		69
B 38.6
(-2.2)
P 		45.3
(-1.7)
P 		28.4
(-3)
P 		41.7
(-2)
P 		105.9
(3)
P 		34.9
(-2.5)
P 		78
C 39.5
(-1.8)
P 		51.4
(0.4)
P 		33.1
(-3)
P 		37.4
(-2.2)
P 		65.6
(3)
P 		37.5
(-2.2)
P 		33
avr 33
(-2.4) 		53.4
(-0.3) 		27.3
(-3) 		40
(-1.7) 		85.5
(3) 		29.5
(-2.8) 		58
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176026_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6294
Sequence Type Exemplar sequence
Representative Public ID C06E1.3 NCBI
Target Description C06E1.3 /REP_DB=WormBase Gene ID /WP=CE00058 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066485(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066485 NCBI Caenorhabditis elegans C06E1.3 (C06E1.3) mRNA, complete cds. 11/11 None
SNAP00000034815 ENSEMBL cdna:SNAP chromosome:CEL140:III:8581051:8583205:1 11/11 None
GENEFINDER00000034827 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8581051:8583205:1 11/11 None
C06E1.3 ENSEMBL cdna:known chromosome:CEL140:III:8581006:8583813:1 gene:C06E1.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8581226-8583200(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.3
Entrez Gene 182313 Entrez gene
SwissProt P34298 EMBL-EBI
WormBase CE30481 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1602809_AT similar to Numb-interacting protein cfa
CANINE_2:CFAAFFX.21170.1.S1_S_AT similar to Numb-interacting protein cfa
DROSGENOME1:151442_AT moladietz dm
DROSOPHILA_2:1633290_A_AT moladietz dm
DROSGENOME1:154408_AT moladietz dm
CHICKEN:GGAAFFX.1645.1.S1_AT similar to CDNA sequence BC019755 gga
CHICKEN:GGAAFFX.1645.3.S1_S_AT similar to CDNA sequence BC019755 gga
U133_X3P:HS2.356664.3.S1_3P_A_AT homolog of Drosophila Numb-interacting protein hs
U133_X3P:HS2.356664.2.S1_3P_A_AT homolog of Drosophila Numb-interacting protein hs
HG-U133_PLUS_2:1554648_A_AT homolog of Drosophila Numb-interacting protein hs
HG-U133_PLUS_2:1555404_A_AT homolog of Drosophila Numb-interacting protein hs
HG-U95D:75857_AT homolog of Drosophila Numb-interacting protein hs
MOUSE430A_2:1460372_AT cDNA sequence BC019755 mm
MOE430A:1460372_AT cDNA sequence BC019755 mm
MOUSE430_2:1460372_AT cDNA sequence BC019755 mm
RAE230B:1385189_AT similar to cDNA sequence BC019755 (predicted) rn
RAT230_2:1385189_AT similar to cDNA sequence BC019755 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast AAA27934 Hypothetical protein C06E1.3 [Caenorhabditis elegans] ref|NP_498886.2| C06E1.3 [Caenorhabditis elegans] sp|P34298|YKQ3_CAEEL Hypothetical protein C06E1.3 in chromosome III 0.0
blast CAE71238 Hypothetical protein CBG18111 [Caenorhabditis briggsae] 0.0
blast A88533 hypothetical protein C06E1.3 - Caenorhabditis elegans 1.0E-175
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498886.2 5 20-42,55-77,188-210,223-245,260-282
C06E1.3 5 20-42,55-77,188-210,223-245,260-282
SNAP00000034815 5 20-42,55-77,188-210,223-245,260-282
GENEFINDER00000034827 5 20-42,55-77,188-210,223-245,260-282
Sequence
Target Sequence 
>C. ELEGANS:176026_AT
gcttgttggtgtctttcagtggttctaatgctgtttttaccacataatgcctataagtcc
atcctcgccaccggaatctcttgtcttatcgcgtgtcttgtctatttactcctctcacct
tgcgaacttcggatagcattcactggtgaaaacttcgaaagagtcgatttaacggctacc
ttttccttctgtttctatcttatttttgcaattggtattctctgtgtactctgtggtctt
ggtctgggtatctgtgagcattggcgaatctacactctgtccacatttttggatgccagc
cttgatgagcatgtcggtccaaaatggaagaagcttccgactggaggacctgcattgcaa
ggagtacagattggagcatatggaacaaatacgacaaacagcagtcgcgacaaaaacgat
atatcaagtgataagactgctggatcaagtggattccaatcacgaacaagcacatgtcaa
tcgagtgcaagctcagcttcattgaggagccaatcatcaattgaaacagtgcacgacgaa
gcagaactcgagcggacgcatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTTGTTGGTGTCTTTCAGTGGTTC 391 305 562 Antisense
ATAATGCCTATAAGTCCATCCTCGC 434 25 605 Antisense
TATCGCGTGTCTTGTCTATTTACTC 299 659 648 Antisense
TTTTCCTTCTGTTTCTATCTTATTT 407 677 742 Antisense
TGGTATTCTCTGTGTACTCTGTGGT 344 551 774 Antisense
TACTCTGTGGTCTTGGTCTGGGTAT 150 645 788 Antisense
GTCTGGGTATCTGTGAGCATTGGCG 553 471 803 Antisense
CATTGGCGAATCTACACTCTGTCCA 363 215 820 Antisense
GCCAGCCTTGATGAGCATGTCGGTC 248 279 856 Antisense
TTCCGACTGGAGGACCTGCATTGCA 424 699 896 Antisense
GAAGCAGAACTCGAGCGGACGCATG 637 339 1099 Antisense
Sequence Source Affymetrix Proprietary Database