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[176025_at]

Description D2007.1 /REP_DB=WormBase Gene ID /WP=CE00126 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 25      6grp_high1_10_10 > 41      4grp_highest_8_8 > 19      4grp_high_8_8 > 55      6grp_highest_nonorm > 61      6grp_total > 52      4grp_total > 40      6grp_highest_sub > 03      6grp_high1_sub > 03      6grp_total_sub > Hat      6grp_rule_based > S3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 298.7
(-0.7)
P 		236.8
(-3)
P 		400.4
(3)
P 		328.7
(0.4)
P 		164
B 304
(-3)
P 		414.4
(0.5)
P 		493
(3)
P 		319.2
(-2.5)
P 		189
C 314.2
(-3)
P 		354.5
(2.9)
P 		355.5
(3)
P 		353.4
(2.7)
P 		41
avr 305.6
(-3) 		335.2
(-1.4) 		416.3
(3) 		333.8
(-1.5) 		111

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 526
1 2 3 4 5 6 range
A 299.5
(-1)
P 		388.5
(0.2)
P 		598.8
(3)
P 		367.4
(-0.1)
P 		230.1
(-2)
P 		152.8
(-3)
P 		446
B 388.7
(-1.3)
P 		448.3
(-0.4)
P 		678.3
(3)
P 		389.4
(-1.3)
P 		380.3
(-1.4)
P 		272.8
(-3)
P 		406
C 348.6
(-1.2)
P 		422.5
(0.5)
P 		448.4
(1.1)
P 		534.5
(3)
P 		323.1
(-1.8)
P 		269.1
(-3)
P 		265
avr 345.6
(-1) 		419.8
(0.3) 		575.2
(3) 		430.4
(0.5) 		311.2
(-1.6) 		231.6
(-3) 		344
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 108.7
(3)
P 		51.4
(-2.7)
P 		104.7
(2.6)
P 		48.1
(-3)
P 		61
B 96.9
(0.8)
P 		102.4
(1.5)
P 		114.2
(3)
P 		68
(-3)
P 		46
C 104
(1.1)
P 		101.9
(0.9)
P 		123.9
(3)
P 		59.6
(-3)
P 		64
avr 103.2
(1.8) 		85.2
(-0.1) 		114.3
(3) 		58.6
(-3) 		56

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 55.2
(-1.9)
P 		138.2
(3)
P 		130.4
(2.5)
P 		93.2
(0.3)
P 		69.4
(-1.1)
P 		37.2
(-3)
P 		101
B 135.3
(0.2)
P 		149.2
(1.5)
P 		164.7
(3)
P 		103.1
(-2.9)
P 		154.5
(2)
P 		101.7
(-3)
P 		63
C 129.2
(3)
P 		128.9
(3)
P 		114.1
(0.7)
P 		107.5
(-0.3)
P 		104.5
(-0.8)
P 		90.1
(-3)
P 		39
avr 106.6
(-0.1) 		138.8
(3) 		136.4
(2.8) 		101.3
(-0.6) 		109.5
(0.2) 		76.3
(-3) 		63
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176025_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6666
Sequence Type Exemplar sequence
Representative Public ID D2007.1 NCBI
Target Description D2007.1 /REP_DB=WormBase Gene ID /WP=CE00126 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066380(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066380 NCBI Caenorhabditis elegans D2007.1 (D2007.1) mRNA, complete cds. 11/11 None
D2007.1 ENSEMBL cdna:known chromosome:CEL140:III:8155395:8155864:1 gene:D2007.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8155390-8155860(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2007.1
Entrez Gene 183937 Entrez gene
SwissProt P34375 EMBL-EBI
WormBase CE00126 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27997 Hypothetical protein D2007.1 [Caenorhabditis elegans] ref|NP_498781.1| D2007.1 [Caenorhabditis elegans] sp|P34375|YLM1_CAEEL Hypothetical protein D2007.1 in chromosome III 2.0E-44
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498781.1 1 4-26
D2007.1 1 4-26
Sequence
Target Sequence 
>C. ELEGANS:176025_AT
gaagatcttatcgttgattcttgtaattttggtgcttgtggtgtcaacagaatccgccgc
ttccaacaatattttctcatcaatcttttcttttggcaagaaaaaaccaacaagtactcc
aacacctagttattcaaaagcttccgcttccacgagccggtgtggagtacaagcatcaca
atgttctgcttatgaatgttgtaactttgatcagacatgtcttcgaaaccgctgcttccc
aagactatcgaactgtccagttactcgggaccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGATCTTATCGTTGATTCTTGTA 17 339 15 Antisense
GATTCTTGTAATTTTGGTGCTTGTG 36 431 30 Antisense
GCTTGTGGTGTCAACAGAATCCGCC 1 305 48 Antisense
CCGCTTCCAACAATATTTTCTCATC 491 263 71 Antisense
CTCATCAATCTTTTCTTTTGGCAAG 640 229 90 Antisense
ACCAACAAGTACTCCAACACCTAGT 269 85 120 Antisense
TATTCAAAAGCTTCCGCTTCCACGA 12 665 145 Antisense
GAGCCGGTGTGGAGTACAAGCATCA 309 385 168 Antisense
GCATCACAATGTTCTGCTTATGAAT 375 309 187 Antisense
CAGACATGTCTTCGAAACCGCTGCT 263 205 226 Antisense
GAACTGTCCAGTTACTCGGGACCAA 662 347 264 Antisense
Sequence Source Affymetrix Proprietary Database