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[176024_at]

Description Y67D8B.A /REP_DB=WormBase Gene ID /WP=CE25543 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 68      4grp_total > 09      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 2.1
(-2.7)
A 		5.4
(1.5)
A 		1.9
(-3)
A 		6.6
(3)
A 		5
B 2.7
(-3)
A 		3.1
(-2.6)
A 		9.2
(3)
A 		2.8
(-2.9)
A 		7
C 5.7
(-2.7)
A 		4.5
(-2.9)
A 		3.6
(-3)
A 		48.8
(3)
A 		45
avr 3.5
(-3) 		4.3
(-2.7) 		4.9
(-2.5) 		19.4
(3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 11.8
(3)
A 		2.2
(-2.4)
A 		1.2
(-3)
A 		8.6
(1.2)
A 		6.3
(-0.1)
A 		9.1
(1.5)
A 		11
B 4.9
(-2.1)
A 		2.6
(-2.7)
A 		1.7
(-2.9)
A 		1.5
(-3)
A 		9.6
(-0.9)
A 		24.2
(3)
A 		23
C 2.1
(-3)
A 		4.2
(-1.9)
A 		5.8
(-1.1)
A 		7.6
(-0.2)
A 		6.5
(-0.7)
A 		13.7
(3)
A 		12
avr 6.3
(-1.4) 		3
(-3) 		2.9
(-3) 		5.9
(-1.6) 		7.5
(-0.8) 		15.7
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 0.8
(-0.4)
A 		1.2
(3)
A 		0.5
(-3)
A 		1
(1.3)
A 		1
B 0.9
(-1.8)
A 		0.8
(-2.2)
A 		2.1
(3)
A 		0.6
(-3)
A 		2
C 1.9
(-2.4)
A 		1.3
(-2.9)
A 		1.2
(-3)
A 		8.2
(3)
A 		7
avr 1.2
(-2.7) 		1.1
(-3) 		1.3
(-2.5) 		3.3
(3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 2.2
(3)
A 		0.8
(-1.4)
A 		0.3
(-3)
A 		2.2
(3)
A 		1.9
(2.1)
A 		2.2
(3)
A 		2
B 1.7
(-2.1)
A 		0.9
(-2.7)
A 		0.4
(-3)
A 		0.4
(-3)
A 		3.9
(-0.6)
A 		9
(3)
A 		9
C 0.8
(-3)
A 		1.3
(-2.2)
A 		1.5
(-1.9)
A 		1.5
(-1.9)
A 		2.1
(-0.9)
A 		4.6
(3)
A 		4
avr 1.6
(-1.8) 		1
(-2.6) 		0.7
(-3) 		1.4
(-2.1) 		2.6
(-0.5) 		5.3
(3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176024_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19346
Sequence Type Exemplar sequence
Representative Public ID Y67D8B.A NCBI
Target Description Y67D8B.A /REP_DB=WormBase Gene ID /WP=CE25543 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000016508 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3201556:3202003:-1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3201561-3202009(-) 100.0 100.0
Functional Annotations
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000016508 1 23-45
Sequence
Target Sequence 
>C. ELEGANS:176024_AT
cgccgctcatttcgtcaactggcgccggcggaagttcgattcatcgcgaagctcgaccga
ttggttcatatatcccatatttctagcaagtgctatctgctgttgtagctgcatggtttg
gtccatcgcgtcttttatgtactttagaaaagaccaacaatgcacagttattgtagtgat
tgacgagaaaccagaaaaatcatctaaatctaagaaaaagcctccgaaaacgcctaagga
aatggaaaacggaccgtcagtggccaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCGCTCATTTCGTCAACTGGCGC 397 255 18 Antisense
CGCCGGCGGAAGTTCGATTCATCGC 5 257 40 Antisense
GTTCGATTCATCGCGAAGCTCGACC 651 441 51 Antisense
TCGCGAAGCTCGACCGATTGGTTCA 205 599 61 Antisense
GACCGATTGGTTCATATATCCCATA 140 383 72 Antisense
ATATCCCATATTTCTAGCAAGTGCT 415 21 87 Antisense
GTGCTATCTGCTGTTGTAGCTGCAT 34 481 107 Antisense
GTAGCTGCATGGTTTGGTCCATCGC 339 457 122 Antisense
GTCCATCGCGTCTTTTATGTACTTT 134 477 138 Antisense
GCCTCCGAAAACGCCTAAGGAAATG 496 279 237 Antisense
TGGAAAACGGACCGTCAGTGGCCAA 620 545 260 Antisense
Sequence Source Affymetrix Proprietary Database