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[176023_at]

Description Y41D4A.A /REP_DB=WormBase Gene ID /WP=CE21846 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_highest_10_10 > 70      6grp_high1_10_10 > 18      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 90      6grp_total > 18      4grp_total > 14      6grp_highest_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 183
1 2 3 4 range
A 224.3
(0.4)
P 		125.3
(-3)
P 		137.2
(-2.6)
P 		299.4
(3)
P 		174
B 239.8
(1.9)
P 		152.2
(-2.2)
P 		135.6
(-3)
P 		263.4
(3)
P 		128
C 203.7
(0.8)
P 		132.1
(-2.3)
P 		116
(-3)
P 		255.9
(3)
P 		140
avr 222.6
(0.9) 		136.5
(-2.7) 		129.6
(-3) 		272.9
(3) 		143

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 151
1 2 3 4 5 6 range
A 255.2
(3)
P 		150
(-1.2)
P 		148.9
(-1.2)
P 		104
(-3)
P 		168.1
(-0.5)
P 		179.9
(0)
P 		151
B 219.9
(3)
P 		184.7
(0.1)
P 		154.7
(-2.3)
P 		155.1
(-2.3)
P 		166.5
(-1.4)
P 		146.3
(-3)
P 		74
C 219.5
(3)
P 		168.8
(0.2)
P 		148.3
(-0.9)
P 		156.9
(-0.4)
P 		133.5
(-1.7)
P 		109.2
(-3)
P 		110
avr 231.5
(3) 		167.8
(-1.1) 		150.6
(-2.2) 		138.7
(-3) 		156
(-1.9) 		145.1
(-2.6) 		93
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 55
1 2 3 4 range
A 81.7
(3)
P 		27.2
(-3)
P 		35.9
(-2)
P 		43.8
(-1.2)
P 		55
B 76.5
(3)
P 		37.6
(-2.2)
P 		31.4
(-3)
P 		56.1
(0.3)
P 		45
C 67.4
(3)
P 		38
(-3)
P 		40.4
(-2.5)
P 		43.2
(-1.9)
P 		29
avr 75.2
(3) 		34.3
(-3) 		35.9
(-2.8) 		47.7
(-1) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 47
(1.6)
P 		53.3
(3)
P 		32.4
(-1.7)
P 		26.4
(-3)
P 		50.7
(2.4)
P 		43.8
(0.9)
P 		27
B 76.5
(3)
P 		61.5
(0.7)
P 		37.6
(-3)
P 		41.1
(-2.5)
P 		67.7
(1.6)
P 		54.6
(-0.4)
P 		39
C 81.4
(3)
P 		51.5
(-0.6)
P 		37.7
(-2.3)
P 		31.6
(-3)
P 		43.2
(-1.6)
P 		36.5
(-2.4)
P 		50
avr 68.3
(3) 		55.4
(0.8) 		35.9
(-2.5) 		33
(-3) 		53.9
(0.6) 		45
(-1) 		35
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176023_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19151
Sequence Type Exemplar sequence
Representative Public ID Y41D4A.A NCBI
Target Description Y41D4A.A /REP_DB=WormBase Gene ID /WP=CE21846 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067734(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067734 NCBI Caenorhabditis elegans Y41D4A.8 (Y41D4A.8) mRNA, complete cds. 11/11 None
SNAP00000028262 ENSEMBL cdna:SNAP chromosome:CEL140:IV:1778787:1781560:-1 11/11 None
GENEFINDER00000028264 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:1776321:1781651:-1 11/11 None
Y41D4A.8 ENSEMBL cdna:known chromosome:CEL140:IV:1778787:1781560:-1 gene:Y41D4A.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1778792-1781566(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4A.8
Entrez Gene 189817 Entrez gene
SwissProt Q95Y20 EMBL-EBI
WormBase CE21846 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7186 G-protein coupled receptor protein signaling pathway inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16021 integral to membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
1584 rhodopsin-like receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68458 Hypothetical protein Y41D4A.8 [Caenorhabditis elegans] ref|NP_500135.1| Y41D4A.8 [Caenorhabditis elegans] 0.0
blast CAE63843 Hypothetical protein CBG08399 [Caenorhabditis briggsae] 0.0
blast CAE63843 Hypothetical protein CBG08399 [Caenorhabditis briggsae] 1.0E-158
blast CAE63966 Hypothetical protein CBG08555 [Caenorhabditis briggsae] 4.0E-39
blast CAE75139 Hypothetical protein CBG23068 [Caenorhabditis briggsae] 4.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.5E-7
Pfam IPR000276 EMBL-EBI Rhodopsin-like GPCR superfamily 1.5E-7
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500135.1 6 63-85,98-120,143-165,186-208,244-266,301-323
Y41D4A.8 6 63-85,98-120,143-165,186-208,244-266,301-323
SNAP00000028262 6 63-85,98-120,143-165,186-208,244-266,301-323
GENEFINDER00000028264 7 94-116,129-151,174-196,217-239,275-297,331-353,368-390
Sequence
Target Sequence 
>C. ELEGANS:176023_AT
ggtgactccgtgcatgtacggtctaatgatgaccgcccagacgtgcagtgtcttcatgac
ggtcggtgtctccgttcatcgctacatcggcgtctgtcatccgtacaaatcggtcgagtg
gctgcccaagaaacgggtcaccactttcatcattggtctactcacgttctccgtgatttt
caacacgactcggttctttgaggtccacatttccaacgtgtgctaccgagaaaacatcga
ctactacatgccatcacttcagccgaccgctcttcgaatgaacgatctgtataggcaaat
attcttcggatgggcgtacaccattgtgatgtatgtggtgccgttcacactgctgatcgc
gctcaactcgatggtgctgtcggcggtgagacggtcgaggcggatgcatatggtttcgca
gtgtggcgccgaaagtgaggagttctcgaagaaagccgaacgaaaggagcgacaaacttc
tattatgctcatctcaatcgtgctcctgttcatcgcctgtaacactcttgcattcgtttg
c

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGTGACTCCGTGCATGTACGGTCTA 363 499 432 Antisense
GACGTGCAGTGTCTTCATGACGGTC 664 377 471 Antisense
CGGCGTCTGTCATCCGTACAAATCG 491 241 519 Antisense
TACAAATCGGTCGAGTGGCTGCCCA 293 643 535 Antisense
AGAAACGGGTCACCACTTTCATCAT 333 73 560 Antisense
TTTCATCATTGGTCTACTCACGTTC 194 673 576 Antisense
ACACGACTCGGTTCTTTGAGGTCCA 602 91 614 Antisense
AACATCGACTACTACATGCCATCAC 141 137 664 Antisense
TATGGTTTCGCAGTGTGGCGCCGAA 519 655 840 Antisense
TATTATGCTCATCTCAATCGTGCTC 684 661 912 Antisense
CTGTAACACTCTTGCATTCGTTTGC 546 239 948 Antisense
Sequence Source Affymetrix Proprietary Database