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[176022_at]

Description C29E4.4 /REP_DB=WormBase Gene ID /WP=CE00086 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 78      4grp_high_8_8 > 43      6grp_highest_nonorm > 92      6grp_total > 69      4grp_total > 53      6grp_highest_sub > Cu      6grp_cgc > 39      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 164
1 2 3 4 range
A 335.6
(3)
P 		257.9
(-0.1)
P 		259.7
(0)
P 		183
(-3)
M 		153
B 277.9
(2.9)
P 		279.8
(3)
P 		221.4
(-0.7)
P 		184.6
(-3)
P 		95
C 314.5
(1.7)
P 		346.5
(3)
P 		261
(-0.6)
P 		203.7
(-3)
P 		143
avr 309.3
(3) 		294.7
(2.3) 		247.4
(-0.1) 		190.4
(-3) 		119

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 281
1 2 3 4 5 6 range
A 272.8
(-0.9)
P 		305.5
(-0.2)
P 		175.2
(-3)
P 		269.2
(-1)
P 		332.5
(0.4)
P 		455.7
(3)
P 		281
B 280.6
(-1)
P 		255.2
(-1.7)
P 		211
(-3)
P 		290.8
(-0.7)
P 		275.6
(-1.2)
P 		421.1
(3)
P 		210
C 302.2
(-0.2)
P 		235.7
(-3)
P 		251.3
(-2.3)
P 		284.8
(-0.9)
P 		299.6
(-0.3)
P 		379
(3)
P 		143
avr 285.2
(-0.9) 		265.5
(-1.5) 		212.5
(-3) 		281.6
(-1) 		302.6
(-0.4) 		418.6
(3) 		206
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 95
1 2 3 4 range
A 122.2
(3)
P 		56
(-1.2)
P 		67.9
(-0.4)
P 		26.8
(-3)
M 		95
B 88.6
(3)
P 		69.1
(0.6)
P 		51.3
(-1.5)
P 		39.3
(-3)
P 		49
C 104.1
(3)
P 		99.6
(2.6)
P 		91
(1.9)
P 		34.4
(-3)
P 		70
avr 105
(3) 		74.9
(0.5) 		70.1
(0.1) 		33.5
(-3) 		72

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 119
1 2 3 4 5 6 range
A 50.3
(-2)
P 		108.6
(2.8)
P 		38.2
(-3)
P 		68.3
(-0.5)
P 		100.3
(2.1)
P 		110.9
(3)
P 		73
B 97.6
(-0.4)
P 		84.9
(-1.1)
P 		51.2
(-3)
P 		77
(-1.5)
P 		112
(0.4)
P 		157
(3)
P 		106
C 112
(1.7)
P 		71.9
(-1.7)
P 		64
(-2.4)
P 		57.3
(-3)
P 		96.9
(0.4)
P 		126.9
(3)
P 		70
avr 86.6
(-0.4) 		88.5
(-0.2) 		51.1
(-3) 		67.5
(-1.8) 		103.1
(0.9) 		131.6
(3) 		81
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176022_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7693
Sequence Type Exemplar sequence
Representative Public ID C29E4.4 NCBI
Target Description C29E4.4 /REP_DB=WormBase Gene ID /WP=CE00086 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066323(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066323 NCBI Caenorhabditis elegans Nuclear Pore complex Protein family member (npp-15) (npp-15) mRNA, complete cds. 11/11 None
SNAP00000010833 ENSEMBL cdna:SNAP chromosome:CEL140:III:7928974:7932747:1 11/11 None
GENEFINDER00000010848 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7928974:7932747:1 11/11 None
C29E4.4 ENSEMBL cdna:known chromosome:CEL140:III:7928974:7932917:1 gene:C29E4.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7926869-7932745(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol npp-15
Ensembl C29E4.4
Entrez Gene 176114 Entrez gene
SwissProt P34343 EMBL-EBI
WormBase CE37484 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
50658 RNA transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5643 nuclear pore inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5215 transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAU87829 Nuclear pore complex protein protein 15 [Caenorhabditis elegans] ref|NP_498724.3| Nuclear Pore complex Protein family member (npp-15) [Caenorhabditis elegans] sp|P34343|NU133_CAEEL Nuclear pore complex protein 15 (Nucleoporin npp-15) 0.0
blast CAE66902 Hypothetical protein CBG12284 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:176022_AT
ggctgtccagccgaatgatgaagcttcggttgaagggttcgcaagagcattccatttgtt
agctgatcttcttgctgtgcatccggattcggatgaattgaaaaagaaaattgataagac
gtggaaagcattagtggattatgacgagtggaaccgggttagaagcaaagaagatgtgga
gaaaaagacaattttcggaaaattctgcaactatttgatcaattcgtatcctgctgacaa
aggtgattctttcccaatttggatgccaatatctcgtcgtctgatcttcccaaccgatat
cgacacagttctcgatgaatgtatcgcgaatacgactggaaatcatctttcatggatcaa
aggtcatctgaaatggattggagagcaactttgtaaacaggctcttctaccaaaatcggc
attcttccgtccggatatgaaacaagttggatcgatttctcaagcagctctcgaagcatt
cggtc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTGTCCAGCCGAATGATGAAGCT 618 539 2769 Antisense
AAGGGTTCGCAAGAGCATTCCATTT 448 159 2801 Antisense
GTTAGCTGATCTTCTTGCTGTGCAT 115 447 2826 Antisense
TCTTGCTGTGCATCCGGATTCGGAT 475 617 2838 Antisense
GATCAATTCGTATCCTGCTGACAAA 625 421 2985 Antisense
GGTGATTCTTTCCCAATTTGGATGC 546 499 3010 Antisense
TTTGGATGCCAATATCTCGTCGTCT 184 667 3026 Antisense
ATCTTCCCAACCGATATCGACACAG 200 31 3052 Antisense
CTTTGTAAACAGGCTCTTCTACCAA 57 223 3157 Antisense
CTTCTACCAAAATCGGCATTCTTCC 677 219 3172 Antisense
CAAGCAGCTCTCGAAGCATTCGGTC 87 185 3229 Antisense
Sequence Source Affymetrix Proprietary Database