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[176021_at]

Description Y105E8B.T /REP_DB=WormBase Gene ID /WP=CE25166 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_total > 54      4grp_total > 05      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 97
1 2 3 4 range
A 41.9
(1.3)
A 		39.5
(1.1)
A 		4.9
(-3)
A 		56
(3)
A 		51
B 55.2
(-1)
A 		32.5
(-3)
A 		60.4
(-0.6)
A 		101.5
(3)
A 		69
C 53.6
(-0.3)
A 		27.4
(-3)
A 		45.7
(-1.1)
A 		85.3
(3)
P 		58
avr 50.2
(-0.9) 		33.1
(-3) 		37
(-2.5) 		80.9
(3) 		48

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 16
(-3)
A 		29.8
(-1.4)
A 		44
(0.2)
A 		27.7
(-1.7)
A 		68.1
(3)
A 		35.1
(-0.8)
A 		52
B 13
(-3)
A 		34.9
(0.7)
A 		44.7
(2.3)
A 		33.7
(0.5)
A 		34.8
(0.6)
A 		48.9
(3)
A 		36
C 16.1
(-1.1)
A 		26.1
(0.2)
A 		47
(3)
A 		2
(-3)
A 		30.7
(0.8)
A 		37.3
(1.7)
A 		45
avr 15
(-3) 		30.3
(0) 		45.2
(3) 		21.1
(-1.8) 		44.5
(2.9) 		40.4
(2) 		30
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 20
1 2 3 4 range
A 15.3
(3)
A 		8.6
(0.1)
A 		1.3
(-3)
A 		8.2
(-0)
A 		14
B 17.6
(1.2)
A 		8
(-3)
A 		14
(-0.4)
A 		21.6
(3)
A 		14
C 17.7
(3)
A 		7.9
(-3)
A 		15.9
(1.9)
A 		14.4
(1)
P 		10
avr 16.9
(3) 		8.2
(-3) 		10.4
(-1.5) 		14.7
(1.5) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 2.9
(-3)
A 		10.6
(-0.4)
A 		9.6
(-0.7)
A 		7
(-1.6)
A 		20.5
(3)
A 		8.5
(-1.1)
A 		18
B 4.5
(-3)
A 		11.6
(0.1)
A 		10.9
(-0.2)
A 		8.9
(-1.1)
A 		14.2
(1.2)
A 		18.2
(3)
A 		14
C 6
(-0.2)
A 		8
(0.8)
A 		12
(2.8)
A 		0.4
(-3)
A 		9.9
(1.7)
A 		12.5
(3)
A 		12
avr 4.5
(-3) 		10.1
(0.2) 		10.8
(0.6) 		5.4
(-2.5) 		14.9
(3) 		13.1
(2) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176021_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18829
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.T NCBI
Target Description Y105E8B.T /REP_DB=WormBase Gene ID /WP=CE25166 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170949
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013495 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14477624:14484603:1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170949 5/11 Cross Hyb Matching Probes A 
SNAP00000013340 5/11 Cross Hyb Matching Probes None
Y105E8A.17 5/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14477554-14484534(+) 93.78 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21666 Hypothetical protein Y105E8A.17 [Caenorhabditis elegans] ref|NP_740945.1| Y105E8A.17 [Caenorhabditis elegans] 0.0
blast CAE64139 Hypothetical protein CBG08755 [Caenorhabditis briggsae] 1.0E-169
blast XP_392117 PREDICTED: similar to ENSANGP00000017895 [Apis mellifera] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR008468 EMBL-EBI DNA methyltransferase 1-associated 1 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:176021_AT
gacgtataatgatttccgttcacaaataatgcttgcacaagaactaaaatcagcaatgca
gactgcagaattcgaattggaaagtattcgaacgcgaatgcaagaaaatggaaaagattt
cgatattgaaccccgttttagaatttctcagctacctgaaggtggtattgatgatgattt
tattggtggaaaaggacaaccggcaactaatcgacgaattacttcatatattgatgctag
ttctaaggatcttactgcgccgaaaattgcacttttttggaattttttttttgaaacttt
tttcaaaaaacgcaaattaaatgaaaaatcctcgaaaattgttttagagatttttcttca
aactgaagcactgcaactttttcctcacgagggacgaggaaaagtggtttctaggccatg
gccgaggggccgacaagtttcagcggccattcgagattttcgcacagtcgagtttttcgc
aca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGTATAATGATTTCCGTTCACAA 701 377 1080 Antisense
TCCGTTCACAAATAATGCTTGCACA 510 593 1094 Antisense
TGCAGACTGCAGAATTCGAATTGGA 130 579 1136 Antisense
TGAACCCCGTTTTAGAATTTCTCAG 33 573 1206 Antisense
GAATTTCTCAGCTACCTGAAGGTGG 278 325 1220 Antisense
AGGATCTTACTGCGCCGAAAATTGC 492 49 1325 Antisense
GCGCCGAAAATTGCACTTTTTTGGA 391 281 1336 Antisense
TCAAACTGAAGCACTGCAACTTTTT 237 629 1437 Antisense
GTTTCAGCGGCCATTCGAGATTTTC 565 449 1516 Antisense
GCGGCCATTCGAGATTTTCGCACAG 606 291 1522 Antisense
TTCGCACAGTCGAGTTTTTCGCACA 470 697 1538 Antisense
Sequence Source Affymetrix Proprietary Database