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[176020_at]

Description Y67D8B.C /REP_DB=WormBase Gene ID /WP=CE25545 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 54      4grp_total > 14      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 8.3
(-0.2)
A 		2
(-3)
A 		3.3
(-2.4)
A 		15.7
(3)
A 		14
B 8.2
(2.8)
A 		8.4
(3)
A 		3.2
(-3)
A 		8
(2.5)
A 		5
C 45.2
(2.3)
A 		5.7
(-2.7)
A 		3.6
(-3)
A 		50.6
(3)
A 		47
avr 20.6
(1.8) 		5.4
(-2.4) 		3.4
(-3) 		24.8
(3) 		21

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 4.7
(-2.9)
A 		4.6
(-2.9)
A 		35.2
(3)
A 		7
(-2.5)
A 		14.8
(-0.9)
A 		4.2
(-3)
A 		31
B 4.9
(-2.3)
A 		4.1
(-2.9)
A 		12.8
(3)
A 		4.7
(-2.5)
A 		3.9
(-3)
A 		12.5
(2.8)
A 		9
C 3.4
(-3)
A 		34.7
(3)
A 		5.7
(-2.6)
A 		8.5
(-2)
A 		4
(-2.9)
A 		15.2
(-0.7)
A 		31
avr 4.3
(-3) 		14.5
(1.5) 		17.9
(3) 		6.7
(-1.9) 		7.6
(-1.5) 		10.6
(-0.2) 		14
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 3
(3)
A 		0.4
(-3)
A 		0.9
(-1.8)
A 		2.3
(1.4)
A 		3
B 2.6
(3)
A 		2.1
(1.4)
A 		0.7
(-3)
A 		1.7
(0.2)
A 		2
C 15
(3)
A 		1.6
(-2.9)
A 		1.3
(-3)
A 		8.5
(0.2)
A 		14
avr 6.9
(3) 		1.4
(-2.6) 		1
(-3) 		4.2
(0.3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 10
1 2 3 4 5 6 range
A 0.9
(-3)
A 		1.6
(-2.4)
A 		7.7
(3)
A 		1.8
(-2.2)
A 		4.5
(0.2)
A 		1
(-2.9)
A 		7
B 1.7
(-2.3)
A 		1.4
(-2.8)
A 		3.1
(0.2)
A 		1.3
(-3)
A 		1.6
(-2.5)
A 		4.7
(3)
A 		3
C 1.3
(-3)
A 		10.6
(3)
A 		1.5
(-2.9)
A 		1.7
(-2.7)
A 		1.3
(-3)
A 		5.1
(-0.5)
A 		9
avr 1.3
(-3) 		4.5
(3) 		4.1
(2.3) 		1.6
(-2.4) 		2.5
(-0.8) 		3.6
(1.3) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176020_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19358
Sequence Type Exemplar sequence
Representative Public ID Y67D8B.C NCBI
Target Description Y67D8B.C /REP_DB=WormBase Gene ID /WP=CE25545 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067896(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067896 NCBI Caenorhabditis elegans Y67D8B.1 (Y67D8B.1) mRNA, complete cds. 10/11 None
Y67D8B.1 ENSEMBL cdna:known chromosome:CEL140:IV:3169942:3172606:-1 gene:Y67D8B.1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3169947-3172546(-) 93.03 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8B.1
Entrez Gene 190513 Entrez gene
SwissProt Q95XU0 EMBL-EBI
WormBase CE31661 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
18346 protein amino acid prenylation inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8318 protein prenyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68546 Hypothetical protein Y67D8B.1 [Caenorhabditis elegans] ref|NP_500297.2| Y67D8B.1 [Caenorhabditis elegans] 0.0
blast AAF40015 Hypothetical protein ZK993.2 [Caenorhabditis elegans] ref|NP_490821.1| ZK993.2 [Caenorhabditis elegans] 1.0E-14
Sequence
Target Sequence 
>C. ELEGANS:176020_AT
gatatcgcgttacttctaacaatttcctctttcatttctcacagcaaaactggactcgag
gaaatcgaaggatttaaaaattggagaacaccggaatttcatgaatgtcagttggactct
tacaagaagaattttgtatcggaaatcgaggaaatgacaaaagaaaaggttaaattgaga
agaagaaaattcgaatttcaagagaaacgggctgaagatattatattttcactggaaaaa
gctttaattcaatattctggccaaccagaggcaagctgcagactgcgatttgctctggaa
aagctcaaaggactcacagaaaacttttctgaaaattttacgacgctggatcctgaagaa
attctacggatagattctgaaattaatagaagaatgcatgagctcgagcattctgaaaga
gaaaaatcgtttatcaagtctgaagaagttggtggctttttcaagtatagagctattgct
caagaaattcaagattctgaggcagaattaaagaatttaaagagccaacgagatgatcta
agtagatcaagcccaaatgagacagtctggcaccacgtgcaaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATATCGCGTTACTTCTAACAATTT 401 425 511 Antisense
CTAACAATTTCCTCTTTCATTTCTC 49 225 526 Antisense
TCCTCTTTCATTTCTCACAGCAAAA 408 593 535 Antisense
GAATGTCAGTTGGACTCTTACAAGA 710 331 613 Antisense
TTAATTCAATATTCTGGCCAACCAG 155 685 754 Antisense
GGCCAACCAGAGGCAAGCTGCAGAC 498 543 769 Antisense
GCTGCAGACTGCGATTTGCTCTGGA 280 297 785 Antisense
ATTTTACGACGCTGGATCCTGAAGA 18 15 845 Antisense
TGCATGAGCTCGAGCATTCTGAAAG 73 579 905 Antisense
GAAGTTGGTGGCTTTTTCAAGTATA 514 335 955 Antisense
AGACAGTCTGGCACCACGTGCAAAT 42 73 1070 Antisense
Sequence Source Affymetrix Proprietary Database