[Home] | [Total List]

[176018_s_at]

Description C29E4.2 /REP_DB=WormBase Gene ID /WP=CE00084 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 75      6grp_high1_10_10 > 66      4grp_highest_8_8 > 41      4grp_high_8_8 > 49      6grp_highest_nonorm > 83      6grp_total > 57      4grp_total > 62      6grp_highest_sub > Cu      6grp_cgc > 38      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 400
1 2 3 4 range
A 597.6
(3)
P 		392.9
(-2)
P 		421.1
(-1.3)
P 		351.4
(-3)
P 		246
B 538.4
(3)
P 		375
(-0.4)
P 		428
(0.7)
P 		250.2
(-3)
P 		288
C 515.1
(3)
P 		378.8
(0.4)
P 		419
(1.2)
P 		197.8
(-3)
P 		317
avr 550.4
(3) 		382.2
(-0.6) 		422.7
(0.3) 		266.5
(-3) 		284

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 375
1 2 3 4 5 6 range
A 600.4
(1.3)
P 		454.1
(-1)
P 		331.4
(-3)
P 		446.1
(-1.2)
P 		509.5
(-0.2)
P 		706.5
(3)
P 		375
B 465.2
(-1.5)
P 		444.2
(-2.1)
P 		523.2
(0.1)
P 		502.9
(-0.5)
P 		414.2
(-3)
P 		623.1
(3)
P 		209
C 431.3
(-1.6)
P 		409.2
(-2.1)
P 		459.3
(-1)
P 		480.1
(-0.6)
P 		365.6
(-3)
P 		647.6
(3)
P 		282
avr 499
(-1.2) 		435.8
(-2.8) 		438
(-2.8) 		476.4
(-1.8) 		429.8
(-3) 		659.1
(3) 		229
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 184
1 2 3 4 range
A 217.6
(3)
P 		85.3
(-1.8)
P 		110.1
(-0.9)
P 		51.4
(-3)
P 		166
B 171.7
(3)
P 		92.6
(-1)
P 		99.2
(-0.7)
P 		53.3
(-3)
P 		118
C 170.5
(3)
P 		108.9
(0.3)
P 		146
(1.9)
P 		33.3
(-3)
P 		137
avr 186.6
(3) 		95.6
(-0.9) 		118.4
(0.1) 		46
(-3) 		141

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 160
1 2 3 4 5 6 range
A 110.7
(-0.7)
P 		161.5
(2.4)
P 		72.2
(-3)
P 		113.1
(-0.5)
P 		153.8
(1.9)
P 		172
(3)
P 		100
B 161.9
(-1)
P 		147.9
(-1.8)
P 		127
(-3)
P 		133.2
(-2.6)
P 		168.3
(-0.6)
P 		232.4
(3)
P 		105
C 159.9
(0.2)
P 		124.9
(-1.6)
P 		116.9
(-2)
P 		96.5
(-3)
P 		118.3
(-1.9)
P 		216.8
(3)
P 		120
avr 144.2
(-0.7) 		144.8
(-0.7) 		105.4
(-3) 		114.3
(-2.5) 		146.8
(-0.6) 		207.1
(3) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 176018_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6085
Sequence Type Exemplar sequence
Representative Public ID C29E4.2 NCBI
Target Description C29E4.2 /REP_DB=WormBase Gene ID /WP=CE00084 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066326(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066326 NCBI Caenorhabditis elegans Temporarily Assigned Gene name family member (tag-261) (tag-261) mRNA, complete cds. 11/11 None
SNAP00000010837 ENSEMBL cdna:SNAP chromosome:CEL140:III:7941647:7945231:1 11/11 None
GENEFINDER00000010845 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7941647:7945231:1 11/11 None
C29E4.2 ENSEMBL cdna:known chromosome:CEL140:III:7941641:7945508:1 gene:C29E4.2 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7941075-7945229(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol tag-261
Ensembl C29E4.2
Entrez Gene 176116 Entrez gene
SwissProt P34341 EMBL-EBI
WormBase CE30620 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAM22041 Temporarily assigned gene name protein 261 [Caenorhabditis elegans] ref|NP_498727.2| Temporarily Assigned Gene name family member (tag-261) [Caenorhabditis elegans] sp|P34341|YK62_CAEEL Hypothetical protein C29E4.2 in chromosome III 0.0
blast S44769 C29E4.2 protein - Caenorhabditis elegans 0.0
blast CAE66907 Hypothetical protein CBG12291 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
scop a.2.7.Seryl-tRNA synthetase (SerRS) All alpha proteins; Long alpha-hairpin; tRNA-binding arm; Seryl-tRNA synthetase (SerRS) 4.19999980926514
Sequence
Target Sequence 
>C. ELEGANS:176018_S_AT
gaagacgtgcggccacgtggtgaacggcctcctatggctccaaacaacctagaattcgat
gctcttcaaacagattttgatattccgcctgctgaatatgttccattaagattcgaggat
attgatgatgccgaactgaacagtgttatcaatttacctggaaatttgctcatcgacaaa
gctttaccattgctcaagaagtttgctgaaaatcgaacagatcgcgaacaaatggcttac
gagatggctaaagcatatgaagatgtggatgttgccgtgtcaactctacaagaacatgtt
gacaaatggcattctcgaatggaaccaatcctcgaagaaggagaaactcgaaaagagtat
gatgttcacgcagttggtcgtgctgtcattggccaatacgatattgaaggtggcacgaaa
cgtttactagatttggttatggatcgtccatggtacgaaatcagtcgatacttcctttcg
tgcctctttatgtgtaatgtcggaaatgtcatggtcagcgaggacatggaactgccactc
gaggaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAGACGTGCGGCCACGTGGTGAAC 600 339 2140 Antisense
CTCCTATGGCTCCAAACAACCTAGA 77 235 2168 Antisense
ACAACCTAGAATTCGATGCTCTTCA 401 113 2183 Antisense
TTCCGCCTGCTGAATATGTTCCATT 256 699 2222 Antisense
GGATGTTGCCGTGTCAACTCTACAA 219 515 2406 Antisense
GCATTCTCGAATGGAACCAATCCTC 478 307 2448 Antisense
GATGTTCACGCAGTTGGTCGTGCTG 550 409 2500 Antisense
TGGTCGTGCTGTCATTGGCCAATAC 30 553 2514 Antisense
AATCAGTCGATACTTCCTTTCGTGC 377 171 2598 Antisense
CTTTCGTGCCTCTTTATGTGTAATG 395 223 2614 Antisense
GACATGGAACTGCCACTCGAGGAAA 471 369 2662 Antisense
Sequence Source Affymetrix Proprietary Database