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[176016_at]

Description M02H5.5 /REP_DB=WormBase Gene ID /WP=CE25954 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 36      6grp_high1_10_10 > 40      4grp_high_8_8 > 13      6grp_highest_nonorm > 90      6grp_total > 50      4grp_total > 11      6grp_highest_sub > 03      6grp_cgc > 93      6grp_high1_sub > 03      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 121.5
(-2.5)
P 		121.9
(-2.5)
M 		105.5
(-3)
A 		316
(3)
P 		211
B 165.4
(-1.1)
P 		174.8
(-0.7)
P 		115.6
(-3)
M 		270.3
(3)
P 		155
C 186.6
(-1)
P 		129.4
(-3)
A 		128.9
(-3)
P 		298.4
(3)
P 		170
avr 157.8
(-1.6) 		142
(-2.1) 		116.7
(-3) 		294.9
(3) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 136.4
(1)
P 		110.3
(-0.8)
P 		135.9
(1)
P 		165.8
(3)
P 		77.7
(-3)
P 		94.5
(-1.9)
P 		88
B 136.5
(-0.2)
P 		117.3
(-2)
P 		172.2
(3)
P 		151.6
(1.1)
P 		105.8
(-3)
P 		117.4
(-2)
P 		66
C 113.6
(-2.6)
P 		140.4
(0.8)
P 		153.5
(2.5)
P 		157.1
(3)
P 		110.5
(-3)
P 		149.8
(2.1)
P 		47
avr 128.8
(0.1) 		122.7
(-0.5) 		153.9
(2.6) 		158.2
(3) 		98
(-3) 		120.6
(-0.7) 		60
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 44.2
(2.4)
P 		26.5
(-3)
M 		27.6
(-2.7)
A 		46.2
(3)
P 		20
B 52.7
(2)
P 		43.2
(0.2)
P 		26.8
(-3)
M 		57.6
(3)
P 		31
C 61.8
(3)
P 		37.2
(-3)
A 		44.9
(-1.1)
P 		50.3
(0.2)
P 		25
avr 52.9
(3) 		35.6
(-2.2) 		33.1
(-3) 		51.4
(2.5) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 25.2
(-2.3)
P 		39.2
(2.1)
P 		29.6
(-0.9)
P 		42
(3)
P 		23.5
(-2.8)
P 		23
(-3)
P 		19
B 47.5
(3)
P 		39
(-3)
P 		41.8
(-1)
P 		40.2
(-2.2)
P 		43
(-0.2)
P 		43.8
(0.4)
P 		9
C 42.1
(0.4)
P 		42.8
(0.6)
P 		39.1
(-0.6)
P 		31.6
(-3)
P 		35.8
(-1.6)
P 		50.1
(3)
P 		19
avr 38.3
(1.1) 		40.3
(3) 		36.8
(-0.4) 		37.9
(0.7) 		34.1
(-3) 		39
(1.7) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176016_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15147
Sequence Type Exemplar sequence
Representative Public ID M02H5.5 NCBI
Target Description M02H5.5 /REP_DB=WormBase Gene ID /WP=CE25954 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070808(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070808 NCBI Caenorhabditis elegans M02H5.5 (M02H5.5) mRNA, complete cds. 11/11 None
SNAP00000034168 ENSEMBL cdna:SNAP chromosome:CEL140:V:459494:461607:1 11/11 None
GENEFINDER00000034175 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:459626:461607:1 11/11 None
M02H5.5 ENSEMBL cdna:known chromosome:CEL140:V:459626:461607:1 gene:M02H5.5 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:459625-461607(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-203
Ensembl M02H5.5
Entrez Gene 187410 Entrez gene
SwissProt Q966H9 EMBL-EBI
WormBase CE25954 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503209 M02H5.5 [Caenorhabditis elegans] gb|AAK84555.1| Hypothetical protein M02H5.5 [Caenorhabditis elegans] 0.0
blast NP_503209 M02H5.5 [Caenorhabditis elegans] gb|AAK84555.1| Hypothetical protein M02H5.5 [Caenorhabditis elegans] 1.0E-175
blast NP_503210 M02H5.4 [Caenorhabditis elegans] gb|AAK84554.1| Hypothetical protein M02H5.4 [Caenorhabditis elegans] 1.0E-135
blast NP_503211 M02H5.3 [Caenorhabditis elegans] gb|AAK84553.1| Hypothetical protein M02H5.3 [Caenorhabditis elegans] 1.0E-132
blast NP_503210 M02H5.4 [Caenorhabditis elegans] gb|AAK84554.1| Hypothetical protein M02H5.4 [Caenorhabditis elegans] 1.0E-131
blast NP_503211 M02H5.3 [Caenorhabditis elegans] gb|AAK84553.1| Hypothetical protein M02H5.3 [Caenorhabditis elegans] 1.0E-129
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 9.4E-16
Sequence
Target Sequence 
>C. ELEGANS:176016_AT
agcaagtctgggctatttgggcggcaatggaaaagctggcaaatactgcaaatgctaaaa
aaaattccacatgcgaaagtgcgaatgttgtgcttcagattgacgatgatttggtggcct
gtgaacagtcgatcgagatcgatctttcctggtgctcgagttataaaaccgagcagttgc
agttcttcgactttgaccatcaagctcagctcgaatatttagtgcaactaatggtagatc
tcaatccaacagacgaagaactcagttatatgctatgccatatttgcttcgaacatatca
aaaaatcatgtgacaggtttactcaagaaaccgttgagcagcttcaagacaccctttctg
atcatttacatgactactacataaaccatgaaaaccgcccgacttactcaggaaggatcg
tttcaatgataaagctcaacaatgcttttcagaagtacgtccagcgggaacgactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGCAAGTCTGGGCTATTTGGGCGGC 64 75 791 Antisense
GTGCGAATGTTGTGCTTCAGATTGA 67 479 869 Antisense
GACGATGATTTGGTGGCCTGTGAAC 138 379 892 Antisense
GATCGAGATCGATCTTTCCTGGTGC 618 417 921 Antisense
GATCTTTCCTGGTGCTCGAGTTATA 295 419 931 Antisense
GCAGTTGCAGTTCTTCGACTTTGAC 540 309 963 Antisense
CGACTTTGACCATCAAGCTCAGCTC 580 251 978 Antisense
ACCGTTGAGCAGCTTCAAGACACCC 4 87 1120 Antisense
GACACCCTTTCTGATCATTTACATG 600 365 1138 Antisense
GCCCGACTTACTCAGGAAGGATCGT 136 285 1187 Antisense
GAAGTACGTCCAGCGGGAACGACTG 163 335 1242 Antisense
Sequence Source Affymetrix Proprietary Database