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[176015_at]

Description Y50D4A.C /REP_DB=WormBase Gene ID /WP=CE26409 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 02      4grp_total > 38      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 61
1 2 3 4 range
A 113.6
(3)
P 		106.4
(2.3)
A 		54.7
(-3)
A 		99.8
(1.6)
A 		59
B 115.7
(3)
A 		84.3
(-2.1)
A 		95.4
(-0.3)
A 		78.5
(-3)
A 		37
C 115.8
(3)
P 		83.4
(-1.3)
A 		70.7
(-3)
A 		99.1
(0.8)
A 		45
avr 115
(3) 		91.4
(-0.4) 		73.6
(-3) 		92.5
(-0.3) 		41

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 104.9
(1.3)
A 		117
(3)
A 		95.8
(-0.1)
A 		75.5
(-3)
A 		107.7
(1.7)
A 		83.3
(-1.9)
A 		42
B 119
(2.5)
P 		123.1
(3)
P 		72.7
(-3)
A 		99.2
(0.2)
A 		85.6
(-1.5)
P 		104.4
(0.8)
P 		50
C 111.6
(1.4)
P 		126.9
(3)
A 		122.2
(2.5)
A 		105
(0.8)
A 		124
(2.7)
P 		67.8
(-3)
P 		59
avr 111.8
(1.3) 		122.3
(3) 		96.9
(-1.1) 		93.2
(-1.7) 		105.8
(0.3) 		85.2
(-3) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 41.4
(3)
P 		23.1
(-1.1)
A 		14.3
(-3)
A 		14.6
(-2.9)
A 		27
B 36.9
(3)
A 		20.8
(-1.8)
A 		22.1
(-1.4)
A 		16.7
(-3)
A 		20
C 38.3
(3)
P 		24
(-1)
A 		24.7
(-0.8)
A 		16.7
(-3)
A 		22
avr 38.9
(3) 		22.6
(-1.3) 		20.4
(-1.8) 		16
(-3) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 19.3
(-2.9)
A 		41.6
(3)
A 		20.9
(-2.5)
A 		19.1
(-3)
A 		32.5
(0.6)
A 		20.3
(-2.7)
A 		23
B 41.4
(3)
P 		41
(2.9)
P 		17.7
(-3)
A 		26.3
(-0.8)
A 		34.8
(1.3)
P 		38.9
(2.4)
P 		24
C 41.4
(3)
P 		38.7
(2.2)
A 		31.1
(-0)
A 		21.1
(-3)
A 		40.1
(2.6)
P 		22.7
(-2.5)
P 		20
avr 34
(0.9) 		40.4
(3) 		23.2
(-2.7) 		22.2
(-3) 		35.8
(1.5) 		27.3
(-1.3) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176015_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19481
Sequence Type Exemplar sequence
Representative Public ID Y50D4A.C NCBI
Target Description Y50D4A.C /REP_DB=WormBase Gene ID /WP=CE26409 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y50D4A.C
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y50D4A.C Y50D4A.C /REP_DB=WormBase Gene ID /WP=CE26409 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070990 1/11 Cross Hyb Matching Probes B 
NM_070991 7/11 Cross Hyb Matching Probes A 
SNAP00000016427 1/11 Cross Hyb Matching Probes None
SNAP00000016428 7/11 Cross Hyb Matching Probes None
GENEFINDER00000016437 8/11 Cross Hyb Matching Probes None
Y50D4A.3 1/11 Cross Hyb Matching Probes B 
Y50D4A.4 7/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1183707-1188590(-) 83.65 86.3
Sequence
Target Sequence 
>C. ELEGANS:176015_AT
acgactccaaaccattggcattcttgttactatcctacgaagctcgatgctcgacacttt
tccaatcgggagtggatattcttgccagaaacaaggctagcgatgaaattgttgaagtga
tgctcgagaaaaagcaaatcgtcgacgcatttcgatttatcgatgtacggaatctgaacg
atgctttgatcccgaaagttgtggaagctgccaatcagcactgcgttcggcagacaagat
atgccattaaagagcatttaacagagaaaaaagctaaagaacgccttattacgaaattcg
gtagttttggaccattcgcctccctctataaatcgattggcgacgagctgtacactgccg
aggaagtgaaaggagccagcgaagagcaggccacatactttccagaatttggaacttcga
ttaatgtgaataataagaagtattctgaggatgcgaataagaaacgagatttggcggctt
tctttgcccatgctattcaagaaactggagagaataacattgccctctatgggaagctgt
ccgatcagatgcttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACGACTCCAAACCATTGGCATTCTT 567 91 806 Antisense
TGGCATTCTTGTTACTATCCTACGA 454 545 821 Antisense
ATCCTACGAAGCTCGATGCTCGACA 463 39 837 Antisense
TGCTCGACACTTTTCCAATCGGGAG 343 579 853 Antisense
AAAAGCAAATCGTCGACGCATTTCG 186 131 935 Antisense
GTCGACGCATTTCGATTTATCGATG 709 473 946 Antisense
GAATCTGAACGATGCTTTGATCCCG 330 329 975 Antisense
AGCAGGCCACATACTTTCCAGAATT 19 79 1190 Antisense
GAGAATAACATTGCCCTCTATGGGA 383 389 1315 Antisense
ATTGCCCTCTATGGGAAGCTGTCCG 452 7 1324 Antisense
GAAGCTGTCCGATCAGATGCTTCAA 595 343 1338 Antisense
Sequence Source Affymetrix Proprietary Database