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[176014_at]

Description Y67D8B.B /REP_DB=WormBase Gene ID /WP=CE25544 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 57      4grp_total > 05      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 173
1 2 3 4 range
A 54.9
(-1.2)
A 		4.5
(-3)
A 		7.3
(-2.9)
A 		175.4
(3)
P 		171
B 94.4
(1)
A 		8.2
(-2.8)
A 		3.9
(-3)
A 		141.3
(3)
P 		137
C 50.8
(-1.5)
A 		24.6
(-2.4)
A 		8
(-3)
A 		176.7
(3)
A 		169
avr 66.7
(-0.7) 		12.4
(-2.8) 		6.4
(-3) 		164.5
(3) 		158

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 101.7
(2.1)
A 		54.8
(-2.1)
A 		111.2
(3)
A 		44.5
(-3)
A 		56.4
(-1.9)
A 		110.1
(2.9)
A 		67
B 84.4
(0.1)
A 		63.5
(-0.8)
A 		12
(-3)
A 		37.2
(-1.9)
A 		16.4
(-2.8)
A 		150.8
(3)
A 		139
C 75.2
(0.2)
A 		78.8
(0.4)
A 		59.8
(-0.6)
A 		12.2
(-3)
A 		42.8
(-1.4)
A 		130.5
(3)
P 		118
avr 87.1
(0.4) 		65.7
(-0.9) 		61
(-1.2) 		31.3
(-3) 		38.5
(-2.6) 		130.5
(3) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 20
(1.6)
A 		1
(-3)
A 		1.9
(-2.8)
A 		25.7
(3)
P 		25
B 30.1
(3)
A 		2
(-2.8)
A 		0.9
(-3)
A 		30.1
(3)
P 		29
C 16.8
(0.1)
A 		7.1
(-2)
A 		2.8
(-3)
A 		29.8
(3)
A 		27
avr 22.3
(1.6) 		3.4
(-2.7) 		1.9
(-3) 		28.5
(3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 18.8
(-0.1)
A 		19.5
(0.2)
A 		24.2
(2)
A 		11.3
(-3)
A 		17
(-0.8)
A 		26.8
(3)
A 		16
B 29.4
(-0)
A 		21.1
(-1)
A 		2.9
(-3)
A 		9.9
(-2.2)
A 		6.7
(-2.6)
A 		56.2
(3)
A 		53
C 27.9
(0.7)
A 		24
(0.1)
A 		15.2
(-1.2)
A 		2.5
(-3)
A 		13.9
(-1.3)
A 		43.7
(3)
P 		41
avr 25.4
(0.1) 		21.5
(-0.6) 		14.1
(-1.9) 		7.9
(-3) 		12.5
(-2.2) 		42.2
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176014_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19190
Sequence Type Exemplar sequence
Representative Public ID Y67D8B.B NCBI
Target Description Y67D8B.B /REP_DB=WormBase Gene ID /WP=CE25544 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067898(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067898 NCBI Caenorhabditis elegans Y67D8B.2 (Y67D8B.2) mRNA, complete cds. 11/11 None
GENEFINDER00000016507 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3186076:3191549:-1 11/11 None
Y67D8B.2 ENSEMBL cdna:known chromosome:CEL140:IV:3186076:3190371:-1 gene:Y67D8B.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3186081-3190377(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y67D8B.2
Entrez Gene 190514 Entrez gene
SwissProt Q95XT8 EMBL-EBI
WormBase CE25544 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK68547 Hypothetical protein Y67D8B.2 [Caenorhabditis elegans] ref|NP_500299.1| Y67D8B.2 [Caenorhabditis elegans] 0.0
blast CAE59894 Hypothetical protein CBG03378 [Caenorhabditis briggsae] 1.0E-149
blast CAE59894 Hypothetical protein CBG03378 [Caenorhabditis briggsae] 1.0E-145
blast CAE59975 Hypothetical protein CBG03466 [Caenorhabditis briggsae] 2.0E-11
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.7E-11
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 3.7E-11
Sequence
Target Sequence 
>C. ELEGANS:176014_AT
gacaagttgcgtctggcagtgtgccaactttgcaaggttgtctgcttttccgtcgtttat
gcgaactatcatttcaaaaatgacgagaacgacgatttgctgttttttggctcaggcttc
tactgggatccggcgaggggaaatgatccattaatggatgattattgccaagaaatgaag
agaattgtgaaccaagttgtatatcctttgcggaaagttggcatggtgaaggaagagttt
gtacttgtcaagttgattcttctttttgattgtacaagtctgatgggcctctctgacgaa
ggtctcgagttcaccagatccatgtgcaacaagtaccgtactaccttatctcagtacgtc
agatgtcatattgaagagcttgccgatacggaaggctggagccaaaatgagatagacaga
tgctcaatggaccgaatcaaaaacttattggatttgccaattggtgtcgagaagctcgga
aaactggacgacgacagtctagctgaaatggtggagagcaactacggcgggatgcgtggc
acacttcaacaacaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAGTTGCGTCTGGCAGTGTGCC 397 365 406 Antisense
ACTTTGCAAGGTTGTCTGCTTTTCC 490 101 432 Antisense
TCTGCTTTTCCGTCGTTTATGCGAA 206 609 446 Antisense
TGCTGTTTTTTGGCTCAGGCTTCTA 504 581 503 Antisense
TTCTACTGGGATCCGGCGAGGGGAA 325 689 523 Antisense
TACAAGTCTGATGGGCCTCTCTGAC 123 643 678 Antisense
GCCTCTCTGACGAAGGTCTCGAGTT 456 281 692 Antisense
GAGTTCACCAGATCCATGTGCAACA 227 399 712 Antisense
AAGTACCGTACTACCTTATCTCAGT 286 157 736 Antisense
GAGCAACTACGGCGGGATGCGTGGC 597 389 921 Antisense
GATGCGTGGCACACTTCAACAACAA 374 413 936 Antisense
Sequence Source Affymetrix Proprietary Database