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[176012_at]

Description Y47C4A.A /REP_DB=WormBase Gene ID /WP=CE24325 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 08      4grp_total > 09      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 2
(-3)
A
5.9
(-2.1)
A
2.5
(-2.9)
A
29.5
(3)
A
28
B 2.4
(-3)
A
2.8
(-2.6)
A
8.4
(3)
A
3.2
(-2.2)
A
6
C 2
(-2.8)
A
3.2
(-0.9)
A
1.9
(-3)
A
5.6
(3)
A
4
avr 2.1
(-3)
4
(-1.9)
4.3
(-1.8)
12.8
(3)
11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 24.3
(3)
A
2.5
(-2.8)
A
4.2
(-2.4)
A
2.5
(-2.8)
A
1.8
(-3)
A
4.5
(-2.3)
A
23
B 1.5
(-2.6)
A
1.7
(-2.2)
A
4.3
(3)
A
1.9
(-1.8)
A
1.7
(-2.2)
A
1.3
(-3)
A
3
C 2
(-1.3)
A
1.7
(-2.3)
A
3
(2)
A
3.3
(3)
A
1.5
(-3)
A
2.3
(-0.3)
A
2
avr 9.3
(3)
2
(-2.8)
3.8
(-1.3)
2.6
(-2.3)
1.7
(-3)
2.7
(-2.2)
8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 0.7
(-2.8)
A
1.3
(-1.9)
A
0.6
(-3)
A
4.3
(3)
A
4
B 0.8
(-2.5)
A
0.7
(-3)
A
1.9
(3)
A
0.7
(-3)
A
1
C 0.7
(-1)
A
0.9
(3)
A
0.6
(-3)
A
0.9
(3)
A
0
avr 0.7
(-3)
1
(-1.6)
1
(-1.6)
2
(3)
1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.5
(3)
A
0.9
(-2.5)
A
0.9
(-2.5)
A
0.6
(-3)
A
0.6
(-3)
A
1.1
(-2.2)
A
4
B 0.5
(-3)
A
0.6
(-1.8)
A
1
(3)
A
0.5
(-3)
A
0.7
(-0.6)
A
0.5
(-3)
A
1
C 0.7
(1)
A
0.5
(-3)
A
0.8
(3)
A
0.7
(1)
A
0.5
(-3)
A
0.8
(3)
A
0
avr 1.9
(3)
0.7
(-2.5)
0.9
(-1.6)
0.6
(-3)
0.6
(-3)
0.8
(-2.1)
1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176012_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19583
Sequence Type Exemplar sequence
Representative Public ID Y47C4A.A NCBI
Target Description Y47C4A.A /REP_DB=WormBase Gene ID /WP=CE24325 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182465(9), NM_075682(9)
Transcript Assignments
Representative
Transcript
Description Matching Probes Related Probesets by Grade
NM_182465 NCBI Caenorhabditis elegans Y108F1.1 (Y108F1.1) mRNA, complete cds. 9/11 A 
NM_075682 NCBI Caenorhabditis elegans Y47C4A.1 (Y47C4A.1) mRNA, complete cds. 9/11 A 
GENEFINDER00000027352 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:282374:286524:-1 9/11 None
GENEFINDER00000014017 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:274498:276489:1 10/11 None
Y108F1.1 ENSEMBL cdna:known chromosome:CEL140:X:274498:277897:1 gene:Y108F1.1 9/11 A 
Y47C4A.1 ENSEMBL cdna:known chromosome:CEL140:X:283125:286524:-1 gene:Y47C4A.1 9/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_067791 1/11 Cross Hyb Matching Probes None
SNAP00000027351 2/11 Cross Hyb Matching Probes None
SNAP00000014003 2/11 Cross Hyb Matching Probes None
Y38F2AR.8 1/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:274497-276489(+) 76.97 99.78
chrX:284532-286524(-) 77.19 100.0
Public Domain and Genome References
Gene Title

Ensembl Y108F1.1
Y47C4A.1
Entrez Gene 189973 Entrez gene
353491 Entrez gene
SwissProt Q965V5 EMBL-EBI
WormBase CE27477 Wormbase
CE27477 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4222 metalloendopeptidase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAK85500 Hypothetical protein Y47C4A.1 [Caenorhabditis elegans] gb|AAN01432.2| Hypothetical protein Y108F1.1 [Caenorhabditis elegans] ref|NP_872265.1| Y108F1.1 [Caenorhabditis elegans] ref|NP_508083.1| Y47C4A.1 [Caenorhabditis elegans] 1.0E-112
blast AAK85500 Hypothetical protein Y47C4A.1 [Caenorhabditis elegans] gb|AAN01432.2| Hypothetical protein Y108F1.1 [Caenorhabditis elegans] ref|NP_872265.1| Y108F1.1 [Caenorhabditis elegans] ref|NP_508083.1| Y47C4A.1 [Caenorhabditis elegans] 1.0E-73
blast NP_500191 Y38F2AR.7 [Caenorhabditis elegans] gb|AAK68448.2| Hypothetical protein Y38F2AR.7 [Caenorhabditis elegans] 2.0E-73
blast CAE70299 Hypothetical protein CBG16820 [Caenorhabditis briggsae] 2.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR000642 EMBL-EBI Peptidase M41 5.0E-28
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.9E-36
Pfam IPR000642 EMBL-EBI Peptidase M41 2.2E-19
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 1.0E-36
Pfam IPR005936 EMBL-EBI Peptidase M41, FtsH 2.3E-8
Pfam IPR003959 EMBL-EBI AAA ATPase, central region 6.1E-25
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000027352 1 33-55
GENEFINDER00000014017 1 33-55
Sequence
Target Sequence
>C. ELEGANS:176012_AT
gttgggagctccagctagatttccaagaatttcgggggttactgtagcccgaaaagtacg
caaacaccgcgactacagtaacccagaaacaccgaatttcacagctcaattgttcacaat
aatcgtgttgggtggtctgcttctgggtggctccggtgaagaagaacaaacactcaatca
gttgctcgtcgaaatggacagaatgggttcggggaacggagctgttgttgtgctcgcttc
cacaaatcgagccgatgtccttgataaggctctcctgagacccggacgcttcgatcgaca
catttcaatcgatttaccgacggttttggagcgaaaagacatgttcgagttgtatatgag
aaagattaagcttgatcatgctccgcaggttaggaaaattgcgattttaaggcgagcgaa


BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position
Strandedness
GTTGGGAGCTCCAGCTAGATTTCCA 220 435 15 Antisense
GAGCTCCAGCTAGATTTCCAAGAAT 580 385 20 Antisense
GTTACTGTAGCCCGAAAAGTACGCA 477 445 52 Antisense
CGCAAACACCGCGACTACAGTAACC 68 253 73 Antisense
TACAGTAACCCAGAAACACCGAATT 75 639 88 Antisense
ACACCGAATTTCACAGCTCAATTGT 421 109 103 Antisense
AATAATCGTGTTGGGTGGTCTGCTT 431 171 132 Antisense
GAAATGGACAGAATGGGTTCGGGGA 310 359 205 Antisense
TGGGTTCGGGGAACGGAGCTGTTGT 386 493 218 Antisense
ATCATGCTCCGCAGGTTAGGAAAAT 295 29 389 Antisense
AAATTGCGATTTTAAGGCGAGCGAA 307 115 410 Antisense
Sequence Source Affymetrix Proprietary Database