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Cluster Members Consensus/Exemplar |
GeneChip Array Information |
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176012_at |
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C. elegans Genome Array |
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Nematode |
Probe Design Information |
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affy.Ce.19583
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Exemplar sequence
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Y47C4A.A NCBI
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Y47C4A.A /REP_DB=WormBase Gene ID /WP=CE24325 /CHR=X /FEA=Sanger Annotation /DEF=(ST.LOUIS)
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This cluster is supported by a Sanger Annotation. |
Annotation Method Description |
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This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s). |
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This is a grade A annotation. |
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NM_182465(9), NM_075682(9) |
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NM_182465 NCBI |
Caenorhabditis elegans Y108F1.1 (Y108F1.1) mRNA, complete cds. |
9/11 |
A |
NM_075682 NCBI |
Caenorhabditis elegans Y47C4A.1 (Y47C4A.1) mRNA, complete cds. |
9/11 |
A |
GENEFINDER00000027352 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:X:282374:286524:-1 |
9/11 |
None |
GENEFINDER00000014017 ENSEMBL |
cdna:GeneFinder chromosome:CEL140:X:274498:276489:1 |
10/11 |
None |
Y108F1.1 ENSEMBL |
cdna:known chromosome:CEL140:X:274498:277897:1 gene:Y108F1.1 |
9/11 |
A |
Y47C4A.1 ENSEMBL |
cdna:known chromosome:CEL140:X:283125:286524:-1 gene:Y47C4A.1 |
9/11 |
A | |
NM_067791 |
1/11 |
Cross Hyb Matching Probes |
None |
SNAP00000027351 |
2/11 |
Cross Hyb Matching Probes |
None |
SNAP00000014003 |
2/11 |
Cross Hyb Matching Probes |
None |
Y38F2AR.8 |
1/11 |
Cross Hyb Matching Probes |
None | |
Genomic Alignment of Consensus/Exemplar Sequence |
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Wormbase March 2004 |
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|
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chrX:274497-276489(+) |
76.97 |
99.78 |
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chrX:284532-286524(-) |
77.19 |
100.0 |
| |
Public Domain and Genome References |
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Y108F1.1 Y47C4A.1
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189973 Entrez gene 353491 Entrez gene
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Q965V5 EMBL-EBI
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CE27477 Wormbase CE27477 Wormbase
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Functional Annotations |
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6508 |
proteolysis |
inferred from electronic annotation |
QuickGO AmiGO |
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4222 |
metalloendopeptidase activity |
inferred from electronic annotation |
QuickGO AmiGO |
5524 |
ATP binding |
inferred from electronic annotation |
QuickGO AmiGO | |
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blast |
AAK85500 |
Hypothetical protein Y47C4A.1 [Caenorhabditis elegans] gb|AAN01432.2| Hypothetical protein Y108F1.1 [Caenorhabditis elegans] ref|NP_872265.1| Y108F1.1 [Caenorhabditis elegans] ref|NP_508083.1| Y47C4A.1 [Caenorhabditis elegans] |
1.0E-112 |
blast |
AAK85500 |
Hypothetical protein Y47C4A.1 [Caenorhabditis elegans] gb|AAN01432.2| Hypothetical protein Y108F1.1 [Caenorhabditis elegans] ref|NP_872265.1| Y108F1.1 [Caenorhabditis elegans] ref|NP_508083.1| Y47C4A.1 [Caenorhabditis elegans] |
1.0E-73 |
blast |
NP_500191 |
Y38F2AR.7 [Caenorhabditis elegans] gb|AAK68448.2| Hypothetical protein Y38F2AR.7 [Caenorhabditis elegans] |
2.0E-73 |
blast |
CAE70299 |
Hypothetical protein CBG16820 [Caenorhabditis briggsae] |
2.0E-71 | |
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Pfam |
IPR000642 EMBL-EBI |
Peptidase M41 |
5.0E-28 |
Pfam |
IPR003959 EMBL-EBI |
AAA ATPase, central region |
1.9E-36 |
Pfam |
IPR000642 EMBL-EBI |
Peptidase M41 |
2.2E-19 |
Pfam |
IPR003959 EMBL-EBI |
AAA ATPase, central region |
1.0E-36 |
Pfam |
IPR005936 EMBL-EBI |
Peptidase M41, FtsH |
2.3E-8 |
Pfam |
IPR003959 EMBL-EBI |
AAA ATPase, central region |
6.1E-25 |
GENEFINDER00000027352 |
1 |
33-55 |
GENEFINDER00000014017 |
1 |
33-55 | |
Sequence |
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>C. ELEGANS:176012_AT
gttgggagctccagctagatttccaagaatttcgggggttactgtagcccgaaaagtacg
caaacaccgcgactacagtaacccagaaacaccgaatttcacagctcaattgttcacaat
aatcgtgttgggtggtctgcttctgggtggctccggtgaagaagaacaaacactcaatca
gttgctcgtcgaaatggacagaatgggttcggggaacggagctgttgttgtgctcgcttc
cacaaatcgagccgatgtccttgataaggctctcctgagacccggacgcttcgatcgaca
catttcaatcgatttaccgacggttttggagcgaaaagacatgttcgagttgtatatgag
aaagattaagcttgatcatgctccgcaggttaggaaaattgcgattttaaggcgagcgaa
BLASTn GenBank NR |
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GTTGGGAGCTCCAGCTAGATTTCCA |
220 |
435 |
15 |
Antisense |
GAGCTCCAGCTAGATTTCCAAGAAT |
580 |
385 |
20 |
Antisense |
GTTACTGTAGCCCGAAAAGTACGCA |
477 |
445 |
52 |
Antisense |
CGCAAACACCGCGACTACAGTAACC |
68 |
253 |
73 |
Antisense |
TACAGTAACCCAGAAACACCGAATT |
75 |
639 |
88 |
Antisense |
ACACCGAATTTCACAGCTCAATTGT |
421 |
109 |
103 |
Antisense |
AATAATCGTGTTGGGTGGTCTGCTT |
431 |
171 |
132 |
Antisense |
GAAATGGACAGAATGGGTTCGGGGA |
310 |
359 |
205 |
Antisense |
TGGGTTCGGGGAACGGAGCTGTTGT |
386 |
493 |
218 |
Antisense |
ATCATGCTCCGCAGGTTAGGAAAAT |
295 |
29 |
389 |
Antisense |
AAATTGCGATTTTAAGGCGAGCGAA |
307 |
115 |
410 |
Antisense | |
|
Affymetrix Proprietary Database |