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[176011_at]

Description C43H6.6 /REP_DB=WormBase Gene ID /WP=CE06957 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 29      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 50
1 2 3 4 range
A 51.2
(3)
A 		14.2
(-1.4)
A 		1.3
(-3)
A 		16.8
(-1.1)
A 		50
B 40.8
(3)
A 		31.4
(1.5)
A 		3
(-3)
A 		29.1
(1.1)
A 		38
C 30.3
(0.3)
A 		41.8
(1.7)
A 		4.9
(-3)
A 		51.6
(3)
A 		47
avr 40.8
(3) 		29.1
(1.1) 		3.1
(-3) 		32.5
(1.7) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 52
1 2 3 4 5 6 range
A 54.7
(3)
A 		4.5
(-2.9)
A 		24.8
(-0.5)
A 		23
(-0.7)
A 		45.3
(1.9)
A 		3.4
(-3)
A 		51
B 2.5
(-3)
A 		23.6
(0.5)
A 		15.4
(-0.9)
A 		38.9
(3)
A 		2.9
(-2.9)
A 		4.2
(-2.7)
A 		36
C 23.3
(1.2)
A 		5.2
(-2.7)
A 		3.7
(-3)
A 		29.2
(2.5)
A 		31.4
(3)
A 		7.6
(-2.2)
A 		28
avr 26.8
(2.1) 		11.1
(-1.6) 		14.6
(-0.7) 		30.4
(3) 		26.5
(2.1) 		5.1
(-3) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 18.6
(3)
A 		3.1
(-2.1)
A 		0.3
(-3)
A 		2.5
(-2.3)
A 		18
B 13
(3)
A 		7.7
(0.4)
A 		0.7
(-3)
A 		6.2
(-0.3)
A 		12
C 10
(1.8)
A 		12
(3)
A 		1.7
(-3)
A 		8.7
(1.1)
A 		10
avr 13.9
(3) 		7.6
(0.1) 		0.9
(-3) 		5.8
(-0.7) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 10.1
(1.3)
A 		1.6
(-2.6)
A 		5.4
(-0.9)
A 		5.8
(-0.7)
A 		13.7
(3)
A 		0.8
(-3)
A 		13
B 0.9
(-3)
A 		7.9
(1.5)
A 		3.7
(-1.2)
A 		10.3
(3)
A 		1.2
(-2.8)
A 		1.6
(-2.6)
A 		9
C 8.6
(2)
A 		1.6
(-2.5)
A 		0.9
(-3)
A 		5.9
(0.2)
A 		10.2
(3)
A 		2.6
(-1.9)
A 		9
avr 6.5
(1.3) 		3.7
(-1.2) 		3.3
(-1.6) 		7.3
(2) 		8.4
(3) 		1.7
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176011_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18187
Sequence Type Exemplar sequence
Representative Public ID C43H6.6 NCBI
Target Description C43H6.6 /REP_DB=WormBase Gene ID /WP=CE06957 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076032(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076032 NCBI Caenorhabditis elegans C43H6.6 (C43H6.6) mRNA, complete cds. 11/11 None
GENEFINDER00000018910 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2395499:2398647:1 11/11 None
C43H6.6 ENSEMBL cdna:known chromosome:CEL140:X:2395499:2396226:1 gene:C43H6.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018900 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2395498-2396226(+) 95.54 100.0
Public Domain and Genome References
Gene Title
Ensembl C43H6.6
Entrez Gene 183425 Entrez gene
SwissProt Q95ZX0 EMBL-EBI
WormBase CE06957 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA96083 Hypothetical protein C43H6.5 [Caenorhabditis elegans] ref|NP_508434.2| C43H6.5 [Caenorhabditis elegans] 1.0E-178
blast CAE58884 Hypothetical protein CBG02117 [Caenorhabditis briggsae] 1.0E-162
blast T29334 hypothetical protein F47G3.1 - Caenorhabditis elegans 1.0E-127
blast AAK84504 Hypothetical protein C43H6.6 [Caenorhabditis elegans] ref|NP_508433.1| C43H6.6 [Caenorhabditis elegans] 3.0E-74
blast T29334 hypothetical protein F47G3.1 - Caenorhabditis elegans 4.0E-71
blast CAE58884 Hypothetical protein CBG02117 [Caenorhabditis briggsae] 4.0E-43
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508433.1 1 5-27
C43H6.6 1 5-27
GENEFINDER00000018910 2 5-27,312-334
Sequence
Target Sequence 
>C. ELEGANS:176011_AT
atgaggtgcacaatatggccgttgtggctgtcacgactattaatattatattatttatca
gtgccggttatagtcattgcgcagaacaccacctgttcaggaaccgtagttttaaatgca
actaaggaattacagtacttgacaactcctaactatgaattgagttataagtatcctcct
tttttagattgccgttttttcataaaagcgccagataaaacacgagttgttgtagaaata
attgatatggaaatggaacccagaatatttgacgaatgttctgattatgttggttttgca
gaagatgtgaccgagaaaaatatttcaaaaatgctcactctttgtgaaactctgacaaag
cgacagtatatatcatcaaccaacacattgaccattattttccagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGTGCACAATATGGCCGTTGT 67 43 13 Antisense
CCGTTGTGGCTGTCACGACTATTAA 52 265 31 Antisense
TATCAGTGCCGGTTATAGTCATTGC 642 657 68 Antisense
TATAGTCATTGCGCAGAACACCACC 575 659 81 Antisense
GAACACCACCTGTTCAGGAACCGTA 457 349 96 Antisense
GTACTTGACAACTCCTAACTATGAA 672 457 147 Antisense
GTATCCTCCTTTTTTAGATTGCCGT 407 451 183 Antisense
TGCCGTTTTTTCATAAAAGCGCCAG 354 585 202 Antisense
AATGTTCTGATTATGTTGGTTTTGC 17 165 287 Antisense
GCGACAGTATATATCATCAACCAAC 209 289 372 Antisense
AACACATTGACCATTATTTTCCAGT 480 135 394 Antisense
Sequence Source Affymetrix Proprietary Database