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[176009_at]

Description T01B6.3 /REP_DB=WormBase Gene ID /WP=CE26470 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 97      6grp_high1_10_10 > 79      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 92      6grp_total > 69      4grp_total > 14      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 489
1 2 3 4 range
A 358
(1.7)
P 		83.5
(-3)
P 		88.6
(-2.9)
P 		431.3
(3)
P 		348
B 318.7
(1.6)
P 		91.4
(-2.7)
P 		77.9
(-3)
P 		391.7
(3)
P 		314
C 365
(0.5)
P 		85.9
(-3)
P 		128.9
(-2.5)
P 		567.3
(3)
P 		481
avr 347.2
(1.1) 		86.9
(-3) 		98.5
(-2.8) 		463.4
(3) 		377

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 331
1 2 3 4 5 6 range
A 300.1
(1.1)
P 		190.3
(-2.2)
P 		184.1
(-2.4)
P 		164.2
(-3)
P 		321.4
(1.7)
P 		365.1
(3)
P 		201
B 289.2
(-0.6)
P 		191.3
(-2.6)
P 		173.7
(-3)
P 		206.5
(-2.3)
P 		338.1
(0.4)
P 		465.7
(3)
P 		292
C 298.3
(0.2)
P 		225
(-1.2)
P 		134.6
(-3)
P 		179.1
(-2.1)
P 		316.2
(0.5)
P 		442.9
(3)
P 		308
avr 295.9
(0) 		202.2
(-2.1) 		164.1
(-3) 		183.3
(-2.6) 		325.2
(0.7) 		424.6
(3) 		261
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 112
1 2 3 4 range
A 130.4
(3)
P 		18.1
(-3)
P 		23.2
(-2.7)
P 		63.1
(-0.6)
P 		112
B 101.6
(3)
P 		22.6
(-2.7)
P 		18
(-3)
P 		83.5
(1.7)
P 		84
C 120.8
(3)
P 		24.7
(-3)
P 		44.9
(-1.7)
P 		95.7
(1.4)
P 		96
avr 117.6
(3) 		21.8
(-3) 		28.7
(-2.6) 		80.8
(0.7) 		96

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 139
1 2 3 4 5 6 range
A 55.3
(-1.4)
P 		67.7
(-0.1)
P 		40.1
(-3)
P 		41.6
(-2.8)
P 		97
(3)
P 		88.9
(2.1)
P 		57
B 100.6
(-0.3)
P 		63.7
(-2)
P 		42.2
(-3)
P 		54.7
(-2.4)
P 		137.4
(1.3)
P 		173.7
(3)
P 		132
C 110.6
(1)
P 		68.7
(-1.2)
P 		34.3
(-3)
P 		36
(-2.9)
P 		102.3
(0.6)
P 		148.3
(3)
P 		114
avr 88.8
(0.1) 		66.7
(-1.3) 		38.9
(-3) 		44.1
(-2.7) 		112.2
(1.5) 		137
(3) 		98
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176009_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18355
Sequence Type Exemplar sequence
Representative Public ID T01B6.3 NCBI
Target Description T01B6.3 /REP_DB=WormBase Gene ID /WP=CE26470 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171633(9), NM_171632(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171633 NCBI Caenorhabditis elegans T01B6.3b (T01B6.3) mRNA, complete cds. 9/11 None
NM_171632 NCBI Caenorhabditis elegans T01B6.3a (T01B6.3) mRNA, complete cds. 9/11 None
GENEFINDER00000036317 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:2315042:2323293:-1 9/11 None
T01B6.3b ENSEMBL cdna:known chromosome:CEL140:X:2314911:2316303:-1 gene:T01B6.3 9/11 None
T01B6.3a ENSEMBL cdna:known chromosome:CEL140:X:2315354:2319326:-1 gene:T01B6.3 9/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000036309 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:2314941-2318869(-) 100.0 100.0
Public Domain and Genome References
Ensembl T01B6.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP13771 Hypothetical protein T01B6.3a [Caenorhabditis elegans] ref|NP_741725.2| T01B6.3a [Caenorhabditis elegans] 0.0
blast CAE58893 Hypothetical protein CBG02139 [Caenorhabditis briggsae] 0.0
blast T25854 hypothetical protein T01B6.3 - Caenorhabditis elegans 1.0E-174
blast AAP13772 Hypothetical protein T01B6.3b [Caenorhabditis elegans] ref|NP_741726.2| T01B6.3b [Caenorhabditis elegans] 9.0E-68
Protein Domains
Database ID Description E-Value
Pfam IPR000644 EMBL-EBI CBS domain 2.3E-8
Pfam IPR000644 EMBL-EBI CBS domain 7.2E-5
Pfam IPR000644 EMBL-EBI CBS domain 0.28
Pfam IPR000644 EMBL-EBI CBS domain 2.4E-9
Pfam IPR000644 EMBL-EBI CBS domain 7.2E-5
Pfam IPR000644 EMBL-EBI CBS domain 0.28
Pfam IPR000644 EMBL-EBI CBS domain 2.4E-9
Pfam IPR000644 EMBL-EBI CBS domain 7.2E-5
Sequence
Target Sequence 
>C. ELEGANS:176009_AT
cgacaggccaccctggatcaaaagaaaattggcacgtggaacgacgacgttttgaagatc
ggcttgaataccacgattgaggaggccatcaagttgatgtcggaacgaaaaatgtctaca
attccggttgtgaatgatttcaaacaaattgtgaatatgcttgcgagaaaggacataatt
ctggaaatcatgagccaccaaggaggaaacttccatgatatgctcaaagagccggtcaag
attttgcaatcactgcaatcgcgattggtatatggacggtctagttacactgttttcgag
actgtagctaaaatgatgacatcggacaagagtagcttgccaatcatcgacgaaggaaag
cgcattcttgcggttgtctcatgtagtgatattctcagctatatccaaacagcagaaaga
actccaaccgaggaccgatcatcttcaaattctagcacatcgagtatgccaaaaagtgca
aagataattcgattttcatcagaaccaaaaaaattaaaacataagaaaataaatccaaaa
aaaagtgaattcttgcttccatattttaatgtttcttcatttcttccggt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGACAGGCCACCCTGGATCAAAAGA 203 253 661 Antisense
GGCACGTGGAACGACGACGTTTTGA 427 511 691 Antisense
GAATACCACGATTGAGGAGGCCATC 177 327 726 Antisense
AGAGCCGGTCAAGATTTTGCAATCA 620 69 888 Antisense
ATCGCGATTGGTATATGGACGGTCT 493 35 918 Antisense
GGACGGTCTAGTTACACTGTTTTCG 542 521 934 Antisense
GTAGCTTGCCAATCATCGACGAAGG 443 457 992 Antisense
GAAAGCGCATTCTTGCGGTTGTCTC 336 359 1016 Antisense
TCCAACCGAGGACCGATCATCTTCA 259 587 1083 Antisense
AAGTGAATTCTTGCTTCCATATTTT 234 159 1203 Antisense
TTAATGTTTCTTCATTTCTTCCGGT 427 683 1226 Antisense
Sequence Source Affymetrix Proprietary Database