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[176008_at]

Description C30F8.3 /REP_DB=WormBase Gene ID /WP=CE25797 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 72      4grp_total > 57      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 167
1 2 3 4 range
A 48.3
(-2.2)
A 		96.7
(-0.1)
A 		167.1
(3)
P 		29.5
(-3)
A 		138
B 49.9
(-1.5)
A 		123.1
(1.7)
A 		153
(3)
A 		16.4
(-3)
A 		137
C 45.4
(-3)
A 		183.4
(3)
P 		125.8
(0.5)
M 		74.7
(-1.7)
A 		138
avr 47.9
(-2.6) 		134.4
(2.2) 		148.6
(3) 		40.2
(-3) 		108

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 83.3
(-0)
A 		106
(3)
P 		83
(-0.1)
A 		101.9
(2.5)
A 		97.7
(1.9)
P 		60.9
(-3)
A 		45
B 50.1
(-3)
A 		87.5
(1.7)
P 		73.9
(0)
A 		97.5
(3)
P 		61.1
(-1.6)
A 		74.3
(0.1)
A 		47
C 62.9
(-1.3)
P 		61.4
(-1.4)
P 		107.1
(3)
M 		45.3
(-3)
A 		104.9
(2.8)
A 		70.6
(-0.5)
A 		62
avr 65.4
(-3) 		85
(2.2) 		88
(3) 		81.6
(1.3) 		87.9
(3) 		68.6
(-2.2) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 49
1 2 3 4 range
A 17.6
(-1)
A 		21
(-0.5)
A 		43.7
(3)
P 		4.3
(-3)
A 		39
B 15.9
(-0.7)
A 		30.4
(2)
A 		35.5
(3)
A 		3.5
(-3)
A 		32
C 15
(-2.6)
A 		52.7
(3)
P 		43.8
(1.7)
M 		12.6
(-3)
A 		40
avr 16.2
(-1.4) 		34.7
(1.9) 		41
(3) 		6.8
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 15.4
(-2.8)
A 		37.7
(3)
P 		18.1
(-2.1)
A 		25.8
(-0.1)
A 		29.5
(0.9)
P 		14.8
(-3)
A 		23
B 17.4
(-3)
A 		29.1
(3)
P 		17.9
(-2.7)
A 		25.8
(1.3)
P 		24.8
(0.8)
A 		27.7
(2.3)
A 		12
C 23.3
(0.4)
P 		18.7
(-0.7)
P 		27.3
(1.4)
M 		9.1
(-3)
A 		33.9
(3)
A 		23.6
(0.5)
A 		25
avr 18.7
(-3) 		28.5
(2.5) 		21.1
(-1.7) 		20.2
(-2.2) 		29.4
(3) 		22
(-1.1) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176008_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.690
Sequence Type Exemplar sequence
Representative Public ID C30F8.3 NCBI
Target Description C30F8.3 /REP_DB=WormBase Gene ID /WP=CE25797 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_059116(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_059116 NCBI Caenorhabditis elegans C30F8.3 (C30F8.3) mRNA, complete cds. 11/11 None
GENEFINDER00000028660 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5096604:5100497:1 10/11 None
SNAP00000028657 ENSEMBL cdna:SNAP chromosome:CEL140:I:5098818:5100497:1 10/11 None
C30F8.3 ENSEMBL cdna:known chromosome:CEL140:I:5096604:5100497:1 gene:C30F8.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5098817-5100497(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C30F8.3
Entrez Gene 172136 Entrez gene
SwissProt Q95YD3 EMBL-EBI
WormBase CE30255 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85456 Hypothetical protein C30F8.3 [Caenorhabditis elegans] ref|NP_491517.2| C30F8.3 [Caenorhabditis elegans] 1.0E-142
blast AAK85456 Hypothetical protein C30F8.3 [Caenorhabditis elegans] ref|NP_491517.2| C30F8.3 [Caenorhabditis elegans] 1.0E-135
blast AAK85456 Hypothetical protein C30F8.3 [Caenorhabditis elegans] ref|NP_491517.2| C30F8.3 [Caenorhabditis elegans] 1.0E-132
blast CAE65726 Hypothetical protein CBG10809 [Caenorhabditis briggsae] 1.0E-111
blast CAE65726 Hypothetical protein CBG10809 [Caenorhabditis briggsae] 1.0E-109
blast CAE65726 Hypothetical protein CBG10809 [Caenorhabditis briggsae] 1.0E-101
Sequence
Target Sequence 
>C. ELEGANS:176008_AT
actgctccgttgagctttgcgggagaagtagcatcatctgaagatgcagccaatactgta
attgacccactcaaatacattgagcatgtctcagtctcccatactccttcaatacaagtt
gctcctccagctcaagaatcatatcctccaagtccagctgatccatttgtaggggtcaac
atggcaaatgagaaaacagatcaattagcttttccgaagcaacaaattcaagtggctcca
agttctgcatcgtcagaagacacgtaccttccaggacctcctgagaaggaactagtcaca
attcaagggaattttcagatgtgtgccggagatacgatagttgtcggggagaaggaaaca
atcggctcagcaactaaaaagtgcgagcttttggattgtgtagctgcaaatgcacagccg
gatagtcatggatcttatacggtgacttatttgagttccgcgact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTGCTCCGTTGAGCTTTGCGGGAG 667 97 232 Antisense
CATTGAGCATGTCTCAGTCTCCCAT 3 217 309 Antisense
CCTTCAATACAAGTTGCTCCTCCAG 530 269 337 Antisense
GCTCCTCCAGCTCAAGAATCATATC 138 299 352 Antisense
CAAGAATCATATCCTCCAAGTCCAG 125 185 364 Antisense
AAGTCCAGCTGATCCATTTGTAGGG 267 155 381 Antisense
TCAAGTGGCTCCAAGTTCTGCATCG 217 633 459 Antisense
GTACCTTCCAGGACCTCCTGAGAAG 651 455 495 Antisense
GGGAATTTTCAGATGTGTGCCGGAG 379 493 538 Antisense
GCACAGCCGGATAGTCATGGATCTT 107 315 643 Antisense
GGTGACTTATTTGAGTTCCGCGACT 15 501 672 Antisense
Sequence Source Affymetrix Proprietary Database