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[176007_at]

Description Y50D4A.E /REP_DB=WormBase Gene ID /WP=CE22279 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 0      4grp_total > 40      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 80
1 2 3 4 range
A 5.7
(-3)
A 		58.8
(1)
A 		85.8
(3)
A 		14.8
(-2.3)
A 		80
B 22.9
(-1.7)
A 		21.8
(-1.8)
A 		73.1
(3)
A 		8.6
(-3)
A 		65
C 9.9
(-3)
A 		56.6
(1.2)
A 		62.6
(1.7)
A 		76.9
(3)
A 		67
avr 12.8
(-3) 		45.7
(0.2) 		73.8
(3) 		33.4
(-1) 		61

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 35.9
(-3)
A 		80.3
(3)
A 		41.2
(-2.3)
A 		39.6
(-2.5)
A 		59.8
(0.2)
A 		47.6
(-1.4)
A 		44
B 11.5
(-2.8)
A 		78.8
(3)
A 		11.5
(-2.8)
A 		9.7
(-3)
A 		35.9
(-0.7)
A 		40.8
(-0.3)
A 		69
C 39.7
(0.8)
A 		61
(3)
A 		34.1
(0.2)
A 		9.1
(-2.5)
A 		4.1
(-3)
A 		9.7
(-2.4)
A 		57
avr 29
(-1.9) 		73.4
(3) 		28.9
(-2) 		19.5
(-3) 		33.3
(-1.5) 		32.7
(-1.5) 		54
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.1
(-3)
A 		12.8
(0.2)
A 		22.4
(3)
A 		2.2
(-3)
A 		20
B 7.3
(-0.8)
A 		5.4
(-1.6)
A 		16.9
(3)
A 		1.8
(-3)
A 		15
C 3.3
(-3)
A 		16.3
(1.2)
A 		21.8
(3)
A 		13
(0.1)
A 		19
avr 4.2
(-3) 		11.5
(-0.3) 		20.4
(3) 		5.7
(-2.4) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 27
1 2 3 4 5 6 range
A 6.6
(-3)
A 		28.6
(3)
A 		9
(-2.3)
A 		10
(-2.1)
A 		18
(0.1)
A 		11.6
(-1.6)
A 		22
B 4
(-2.6)
A 		26.2
(3)
A 		2.8
(-2.9)
A 		2.6
(-3)
A 		14.6
(0.1)
A 		15.2
(0.2)
A 		24
C 14.7
(1.6)
A 		18.6
(3)
A 		8.7
(-0.4)
A 		1.8
(-2.8)
A 		1.3
(-3)
A 		3.2
(-2.3)
A 		17
avr 8.4
(-1.9) 		24.5
(3) 		6.8
(-2.4) 		4.8
(-3) 		11.3
(-1) 		10
(-1.4) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176007_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19472
Sequence Type Exemplar sequence
Representative Public ID Y50D4A.E NCBI
Target Description Y50D4A.E /REP_DB=WormBase Gene ID /WP=CE22279 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000016426 ENSEMBL cdna:SNAP chromosome:CEL140:V:1180482:1196829:1 9/11 None
GENEFINDER00000016436 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:1180452:1181363:1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1180451-1180847(+) 95.71 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68503 Hypothetical protein Y50D4A.2 [Caenorhabditis elegans] ref|NP_503393.2| Y50D4A.2 [Caenorhabditis elegans] 3.0E-61
blast CAE58015 Hypothetical protein CBG01085 [Caenorhabditis briggsae] 1.0E-46
blast CAE58019 Hypothetical protein CBG01090 [Caenorhabditis briggsae] 1.0E-39
blast CAE58019 Hypothetical protein CBG01090 [Caenorhabditis briggsae] 4.0E-39
blast CAE58023 Hypothetical protein CBG01095 [Caenorhabditis briggsae] 1.0E-33
blast AAB65367 Hypothetical protein T21H3.1a [Caenorhabditis elegans] ref|NP_001024152.1| T21H3.1a [Caenorhabditis elegans] 3.0E-33
Protein Domains
Database ID Description E-Value
Pfam IPR002921 EMBL-EBI Lipase, class 3 9.5E-33
Pfam IPR002921 EMBL-EBI Lipase, class 3 3.6E-33
Sequence
Target Sequence 
>C. ELEGANS:176007_AT
atgggacagcctgacgctgacaattttcaggtcaccggccactctcttggtggagctcta
gcctcccttgctgccacatatctccgatataccagtctcgtatcggctgatcagcttctc
ctcgtcacattcggccaaccacgtaccgggaacatggacttcgcgaccagcgttgacaac
ctggtcccaaatgcgtatcgtgtcacacattctcatgatcccgtaccacacttgcctgga
caaggccatcacggctactttca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGACAGCCTGACGCTGACAATT 67 51 13 Antisense
TGACAATTTTCAGGTCACCGGCCAC 386 571 30 Antisense
GCCACTCTCTTGGTGGAGCTCTAGC 551 279 50 Antisense
ATATCTCCGATATACCAGTCTCGTA 257 21 90 Antisense
AGTCTCGTATCGGCTGATCAGCTTC 382 61 106 Antisense
GTACCGGGAACATGGACTTCGCGAC 163 457 155 Antisense
CCAGCGTTGACAACCTGGTCCCAAA 219 271 179 Antisense
TGGTCCCAAATGCGTATCGTGTCAC 345 549 194 Antisense
ATCGTGTCACACATTCTCATGATCC 546 35 209 Antisense
GTACCACACTTGCCTGGACAAGGCC 498 457 235 Antisense
GACAAGGCCATCACGGCTACTTTCA 147 361 251 Antisense
Sequence Source Affymetrix Proprietary Database