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[176006_at]

Description C30F8.1 /REP_DB=WormBase Gene ID /WP=CE25795 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 11      4grp_total > 63      6grp_cgc > 53      6grp_cgc_sub > 02      6grp_total_sub > Hat      6grp_rule_based > S2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 77
1 2 3 4 range
A 68.4
(1.8)
A 		7
(-3)
A 		83.5
(3)
A 		60.5
(1.2)
A 		77
B 58.3
(-2.9)
A 		78.7
(3)
A 		64.6
(-1.1)
A 		58
(-3)
A 		21
C 80.7
(3)
A 		52.5
(-0.1)
A 		26.4
(-3)
A 		37.2
(-1.8)
A 		54
avr 69.1
(3) 		46.1
(-3) 		58.2
(0.2) 		51.9
(-1.5) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 88
1 2 3 4 5 6 range
A 4.1
(-3)
A 		91.6
(3)
A 		57.2
(0.6)
A 		30.1
(-1.2)
A 		22.2
(-1.8)
A 		4.8
(-3)
A 		88
B 36.2
(-1.1)
A 		81.5
(3)
A 		31.7
(-1.6)
A 		42.7
(-0.5)
A 		15.9
(-3)
A 		33.3
(-1.4)
A 		66
C 68.6
(3)
A 		63.3
(2.5)
A 		64
(2.6)
A 		5.9
(-3)
A 		33.1
(-0.4)
A 		6.1
(-3)
A 		63
avr 36.3
(-1) 		78.8
(3) 		51
(0.4) 		26.2
(-1.9) 		23.7
(-2.2) 		14.7
(-3) 		64
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 25
1 2 3 4 range
A 24.9
(3)
A 		1.5
(-3)
A 		21.8
(2.2)
A 		8.9
(-1.1)
A 		23
B 18.6
(2.3)
A 		19.4
(3)
A 		15
(-0.8)
A 		12.4
(-3)
A 		7
C 26.7
(3)
A 		15.1
(-0.4)
A 		9.2
(-2.1)
A 		6.3
(-3)
A 		20
avr 23.4
(3) 		12
(-1.8) 		15.3
(-0.4) 		9.2
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 0.8
(-3)
A 		32.6
(3)
A 		12.5
(-0.8)
A 		7.6
(-1.7)
A 		6.7
(-1.9)
A 		1.2
(-2.9)
A 		32
B 12.6
(-1.2)
A 		27.1
(3)
A 		7.7
(-2.7)
A 		11.3
(-1.6)
A 		6.5
(-3)
A 		12.4
(-1.3)
A 		21
C 25.4
(3)
A 		19.3
(1.5)
A 		16.3
(0.7)
A 		1.2
(-3)
A 		10.7
(-0.6)
A 		2
(-2.8)
A 		24
avr 12.9
(-0.8) 		26.3
(3) 		12.2
(-1) 		6.7
(-2.6) 		8
(-2.2) 		5.2
(-3) 		21
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176006_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.375
Sequence Type Exemplar sequence
Representative Public ID C30F8.1 NCBI
Target Description C30F8.1 /REP_DB=WormBase Gene ID /WP=CE25795 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170852(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_170852 NCBI Caenorhabditis elegans Formin HOmology Domain family member (fhod-1) (fhod-1) mRNA, complete cds. 11/11 A 
SNAP00000028651 ENSEMBL cdna:SNAP chromosome:CEL140:I:5060777:5065285:-1 9/11 None
GENEFINDER00000028662 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:5060957:5066747:-1 11/11 None
C46H11.11b ENSEMBL cdna:known chromosome:CEL140:I:5058282:5068832:-1 gene:C46H11.11 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
172133 2 1 NM_170852 173614_at (11), 176006_at (11)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:5063342-5068831(-) 100.0 100.0
Public Domain and Genome References
Ensembl C46H11.11
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAL16322 Hypothetical protein C46H11.11b [Caenorhabditis elegans] ref|NP_740839.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 0.0
blast CAE65723 Hypothetical protein CBG10805 [Caenorhabditis briggsae] 0.0
blast AAF99890 Hypothetical protein C46H11.11a [Caenorhabditis elegans] ref|NP_740840.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 0.0
blast CAE65723 Hypothetical protein CBG10805 [Caenorhabditis briggsae] 1.0E-93
blast AAL16322 Hypothetical protein C46H11.11b [Caenorhabditis elegans] ref|NP_740839.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 1.0E-93
blast CAE65723 Hypothetical protein CBG10805 [Caenorhabditis briggsae] 2.0E-80
blast AAL16322 Hypothetical protein C46H11.11b [Caenorhabditis elegans] ref|NP_740839.1| Formin HOmology Domain family member (fhod-1) [Caenorhabditis elegans] 2.0E-80
Protein Domains
Database ID Description E-Value
Pfam IPR003104 EMBL-EBI Actin-binding FH2 2.0E-101
Sequence
Target Sequence 
>C. ELEGANS:176006_AT
gatgcagcttggtacttcgaacacaaacttcattacgcgtcaaaactataattgataagc
ttctgaattgttctggacgtgatcaacgacgcgcattattctccctcaaacagatattcc
aggatgaccaagatcttgttcacgagtttgttcaaaatcaaggtctcgattgcatgattc
gattgggtcgaactgctgatcaaaaccatcagaattatattctacgagctcttggacaat
tgatgctctatgtggatggaatgaatggaataattgcacataatggaaccattcagtggc
tctacgagcttctcgattcaccattccgacttgttgtaaaaacagctcttaaactacttc
ttgtgtttatcgaatacaatgacaacaatgcattactggtgctcacagccattcaaaccg
ttgacaagtcgaagggacaagctgattggtctggacttatgaaggtgctgactgaaaaag
actcaccagatgctgaaactcttgtctacggaatgacagttgttaataaggctctgcatg
ggattccagaca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATGCAGCTTGGTACTTCGAACACA 476 413 1622 Antisense
AACACAAACTTCATTACGCGTCAAA 590 133 1641 Antisense
TGATCAACGACGCGCATTATTCTCC 361 565 1701 Antisense
ATTCAGTGGCTCTACGAGCTTCTCG 645 9 1912 Antisense
GATTCACCATTCCGACTTGTTGTAA 302 429 1936 Antisense
AAAACAGCTCTTAAACTACTTCTTG 132 131 1960 Antisense
AATGCATTACTGGTGCTCACAGCCA 269 165 2008 Antisense
GCTCACAGCCATTCAAACCGTTGAC 527 301 2022 Antisense
GGGACAAGCTGATTGGTCTGGACTT 329 495 2055 Antisense
GATGCTGAAACTCTTGTCTACGGAA 710 411 2110 Antisense
AAGGCTCTGCATGGGATTCCAGACA 569 161 2149 Antisense
Sequence Source Affymetrix Proprietary Database