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[176004_at]

Description M02H5.4 /REP_DB=WormBase Gene ID /WP=CE25953 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 22      6grp_high1_10_10 > 02      4grp_highest_8_8 > 07      4grp_high_8_8 > 29      6grp_highest_nonorm > 50      6grp_total > 07      4grp_total > 26      6grp_highest_sub > De      6grp_cgc > 20      6grp_high1_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 203
1 2 3 4 range
A 304.5
(-2.1)
P 		418
(3)
P 		284.1
(-3)
P 		403.7
(2.4)
P 		134
B 222.4
(-3)
P 		309.7
(0)
P 		300.2
(-0.3)
P 		394.9
(3)
P 		173
C 298.3
(-2.3)
P 		371.6
(0.8)
P 		280.3
(-3)
P 		425.2
(3)
P 		145
avr 275.1
(-3) 		366.4
(1.1) 		288.2
(-2.4) 		407.9
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 420
1 2 3 4 5 6 range
A 717.1
(3)
P 		400.8
(-2.1)
P 		535.7
(0.1)
P 		341.7
(-3)
P 		403.6
(-2)
P 		423.4
(-1.7)
P 		375
B 619.8
(3)
P 		559.2
(1.4)
P 		609.3
(2.7)
P 		537.6
(0.8)
P 		396.6
(-3)
P 		456.4
(-1.4)
P 		223
C 547.9
(1.4)
P 		641.7
(3)
P 		437.4
(-0.6)
P 		563.6
(1.6)
P 		296.8
(-3)
P 		460.1
(-0.2)
P 		345
avr 628.3
(3) 		533.9
(0.8) 		527.5
(0.7) 		481
(-0.4) 		365.7
(-3) 		446.6
(-1.2) 		263
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 52
1 2 3 4 range
A 110.9
(3)
P 		90.7
(0.7)
P 		74.3
(-1.2)
P 		59.1
(-3)
P 		52
B 70.9
(-2.5)
P 		76.5
(-0.2)
P 		69.6
(-3)
P 		84.2
(3)
P 		15
C 98.7
(1.6)
P 		106.8
(3)
P 		97.7
(1.4)
P 		71.7
(-3)
P 		35
avr 93.5
(3) 		91.3
(2.4) 		80.5
(-0.6) 		71.7
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 129
1 2 3 4 5 6 range
A 132.2
(1.9)
P 		142.5
(3)
P 		116.7
(0.2)
P 		86.7
(-3)
P 		121.8
(0.8)
P 		103.1
(-1.2)
P 		56
B 215.7
(3)
P 		186.1
(0.6)
P 		148
(-2.5)
P 		142.4
(-3)
P 		161.1
(-1.5)
P 		170.2
(-0.7)
P 		73
C 203.1
(3)
P 		195.8
(2.6)
P 		111.3
(-2.1)
P 		113.3
(-2)
P 		96
(-3)
P 		154
(0.2)
P 		107
avr 183.7
(3) 		174.8
(2.2) 		125.3
(-2) 		114.1
(-3) 		126.3
(-1.9) 		142.4
(-0.6) 		70
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176004_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15261
Sequence Type Exemplar sequence
Representative Public ID M02H5.4 NCBI
Target Description M02H5.4 /REP_DB=WormBase Gene ID /WP=CE25953 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070809(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070809 NCBI Caenorhabditis elegans M02H5.4 (M02H5.4) mRNA, complete cds. 11/11 None
SNAP00000034170 ENSEMBL cdna:SNAP chromosome:CEL140:V:462429:464685:1 11/11 None
GENEFINDER00000034183 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:462429:464685:1 11/11 None
M02H5.4 ENSEMBL cdna:known chromosome:CEL140:V:462429:464685:1 gene:M02H5.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:462428-464685(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-202
Ensembl M02H5.4
Entrez Gene 187409 Entrez gene
SwissProt Q966H8 EMBL-EBI
WormBase CE25953 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503210 M02H5.4 [Caenorhabditis elegans] gb|AAK84554.1| Hypothetical protein M02H5.4 [Caenorhabditis elegans] 0.0
blast NP_503211 M02H5.3 [Caenorhabditis elegans] gb|AAK84553.1| Hypothetical protein M02H5.3 [Caenorhabditis elegans] 1.0E-149
blast NP_503211 M02H5.3 [Caenorhabditis elegans] gb|AAK84553.1| Hypothetical protein M02H5.3 [Caenorhabditis elegans] 1.0E-139
blast NP_503209 M02H5.5 [Caenorhabditis elegans] gb|AAK84555.1| Hypothetical protein M02H5.5 [Caenorhabditis elegans] 1.0E-136
blast NP_503209 M02H5.5 [Caenorhabditis elegans] gb|AAK84555.1| Hypothetical protein M02H5.5 [Caenorhabditis elegans] 1.0E-127
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.8E-14
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 6.9E-7
Sequence
Target Sequence 
>C. ELEGANS:176004_AT
agttgccaagtggttcacctactttgaagattttcaacagttttcttcggaatttcagat
agagattattaaaaaagtttggattgtctggaatggtttggaaaagctggcaactaccgc
caaaatgagaaagcggatgaattgtgatgatattcttatggtattacaaatggaaaatga
tctagtggcttgtgggaagtcggtagagttcgacttatcttggtgctcaaattacaaagc
ggagcagtttgcattcatcgattcaaattggaacaaacatgaagagctgctggaattgat
ggtacaactcaacccaacagatgaggaactttgttacatgctatgtcatttgtgtttcca
acaaattagcaaacaatgtgacgggcaaatacttgaagccgttgagcaatttcaagattc
tatatcaaatcatttacacgactattacttgaaccatttgtcccgcccgaattattccgg
aaggattgctgctttgatgaagcttaatagtattgctcagcaattcatctaccaagacc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGTTGCCAAGTGGTTCACCTACTTT 540 63 636 Antisense
GGAAAAGCTGGCAACTACCGCCAAA 434 527 735 Antisense
TCGGTAGAGTTCGACTTATCTTGGT 364 601 835 Antisense
GGAGCAGTTTGCATTCATCGATTCA 71 521 876 Antisense
GAAGAGCTGCTGGAATTGATGGTAC 530 339 916 Antisense
GATGGTACAACTCAACCCAACAGAT 366 407 933 Antisense
GAGGAACTTTGTTACATGCTATGTC 434 403 958 Antisense
TGCTATGTCATTTGTGTTTCCAACA 14 581 974 Antisense
CTATTACTTGAACCATTTGTCCCGC 431 215 1077 Antisense
ATTCCGGAAGGATTGCTGCTTTGAT 534 7 1109 Antisense
GCTCAGCAATTCATCTACCAAGACC 432 301 1150 Antisense
Sequence Source Affymetrix Proprietary Database