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[176002_at]

Description M02H5.8 /REP_DB=WormBase Gene ID /WP=CE21073 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 09      6grp_high1_10_10 > 91      6grp_highest_nonorm > 64      6grp_total > 83      4grp_total > 56      6grp_high1_sub > 05      6grp_total_sub > Hat      4grp_rule_based > L3      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 606
1 2 3 4 range
A 162.2
(-2.1)
A 		426.2
(0.6)
P 		660.6
(3)
P 		72.1
(-3)
A 		589
B 150.3
(-1.8)
A 		314.9
(0.4)
P 		515.1
(3)
P 		61.5
(-3)
A 		454
C 54.4
(-3)
A 		278.5
(-0.8)
P 		652.8
(3)
P 		90.9
(-2.6)
A 		598
avr 122.3
(-2.5) 		339.9
(-0) 		609.5
(3) 		74.8
(-3) 		535

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1014
1 2 3 4 5 6 range
A 347.4
(-3)
P 		855.3
(1.9)
P 		947.5
(2.8)
P 		695.2
(0.4)
P 		967.9
(3)
P 		634.4
(-0.2)
P 		621
B 465.9
(-3)
P 		870.4
(0.4)
P 		866.2
(0.3)
P 		814.9
(-0.1)
P 		1189
(3)
P 		668.7
(-1.3)
P 		723
C 504.3
(-3)
P 		783.6
(-1)
P 		885.3
(-0.3)
P 		640.5
(-2)
P 		1361.1
(3)
P 		922.8
(-0.1)
P 		857
avr 439.2
(-3) 		836.4
(0.2) 		899.7
(0.8) 		716.9
(-0.7) 		1172.7
(3) 		742
(-0.5) 		734
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 217
1 2 3 4 range
A 59
(-1.2)
A 		92.5
(0)
P 		172.7
(3)
P 		10.6
(-3)
A 		162
B 47.9
(-1)
A 		77.8
(0.7)
P 		119.4
(3)
P 		13.1
(-3)
A 		106
C 18
(-2.9)
A 		80.1
(-1.2)
P 		227.5
(3)
P 		15.3
(-3)
A 		212
avr 41.6
(-1.9) 		83.5
(-0.4) 		173.2
(3) 		13
(-3) 		160

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 419
1 2 3 4 5 6 range
A 64
(-3)
P 		304.2
(3)
P 		206.3
(0.6)
P 		176.3
(-0.2)
P 		292.1
(2.7)
P 		154.5
(-0.7)
P 		240
B 162.1
(-3)
P 		289.7
(-0.6)
P 		210.3
(-2.1)
P 		215.8
(-2)
P 		483.1
(3)
P 		249.3
(-1.4)
P 		321
C 186.9
(-1.9)
P 		239.1
(-0.9)
P 		225.3
(-1.1)
P 		128.8
(-3)
P 		440.4
(3)
P 		308.9
(0.5)
P 		312
avr 137.7
(-3) 		277.7
(0.1) 		214
(-1.3) 		173.6
(-2.2) 		405.2
(3) 		237.6
(-0.8) 		268
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176002_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14806
Sequence Type Exemplar sequence
Representative Public ID M02H5.8 NCBI
Target Description M02H5.8 /REP_DB=WormBase Gene ID /WP=CE21073 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070805(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070805 NCBI Caenorhabditis elegans M02H5.8 (M02H5.8) mRNA, complete cds. 11/11 None
SNAP00000034165 ENSEMBL cdna:SNAP chromosome:CEL140:V:449849:450210:1 9/11 None
GENEFINDER00000034179 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:449849:450210:1 11/11 None
M02H5.8 ENSEMBL cdna:known chromosome:CEL140:V:449849:450210:1 gene:M02H5.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:449848-450210(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M02H5.8
Entrez Gene 187412 Entrez gene
SwissProt Q966I2 EMBL-EBI
WormBase CE21073 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_503206 M02H5.8 [Caenorhabditis elegans] gb|AAK84558.1| Hypothetical protein M02H5.8 [Caenorhabditis elegans] 4.0E-51
blast NP_503206 M02H5.8 [Caenorhabditis elegans] gb|AAK84558.1| Hypothetical protein M02H5.8 [Caenorhabditis elegans] 8.0E-40
blast CAE58259 Hypothetical protein CBG01360 [Caenorhabditis briggsae] 4.0E-29
blast CAE58259 Hypothetical protein CBG01360 [Caenorhabditis briggsae] 9.0E-28
blast CAE61658 Hypothetical protein CBG05594 [Caenorhabditis briggsae] 5.0E-21
blast CAE61658 Hypothetical protein CBG05594 [Caenorhabditis briggsae] 3.0E-20
Sequence
Target Sequence 
>C. ELEGANS:176002_AT
atggcctccgcaattggtaagaattttcaaagcggtgcccgtgaatgtagcacatttgaa
aaaatcaagaccgaattgtcggccgccgggctttcttccggagccatcgatggtatcctg
aagatcgctgccacctataagccaaaggagggcgagaagccagatctggctcaagctatg
gtgactattggaaagctcttcgctgaacttgagacattcatcaaaactcaaccggaatcc
gatcaaactatctatcatgctattatcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCCTCCGCAATTGGTAAGAATT 267 53 13 Antisense
AAGAATTTTCAAAGCGGTGCCCGTG 189 151 31 Antisense
ATCAAGACCGAATTGTCGGCCGCCG 244 25 76 Antisense
TTTCTTCCGGAGCCATCGATGGTAT 100 673 104 Antisense
ATGGTATCCTGAAGATCGCTGCCAC 268 51 122 Antisense
TCGCTGCCACCTATAAGCCAAAGGA 644 599 137 Antisense
GCCAGATCTGGCTCAAGCTATGGTG 250 279 171 Antisense
GGTGACTATTGGAAAGCTCTTCGCT 415 501 192 Antisense
AGCTCTTCGCTGAACTTGAGACATT 140 81 206 Antisense
AACCGGAATCCGATCAAACTATCTA 176 147 242 Antisense
CAAACTATCTATCATGCTATTATCG 15 193 256 Antisense
Sequence Source Affymetrix Proprietary Database