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[176001_at]

Description E01A2.5 /REP_DB=WormBase Gene ID /WP=CE24872 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 49      4grp_high_8_8 > 37      6grp_total > 38      4grp_total > 34      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 191
1 2 3 4 range
A 380.5
(-3)
P 		568.7
(3)
P 		436.6
(-1.2)
P 		541
(2.1)
P 		188
B 432.9
(-3)
P 		533.8
(3)
P 		451.1
(-1.9)
P 		458.9
(-1.5)
M 		101
C 377.7
(-3)
P 		530.7
(3)
P 		451.8
(-0.1)
P 		448.6
(-0.2)
P 		153
avr 397
(-3) 		544.4
(3) 		446.5
(-1) 		482.8
(0.5) 		147

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 226
1 2 3 4 5 6 range
A 385.5
(3)
P 		268.4
(-2.3)
P 		254
(-3)
P 		288.4
(-1.4)
P 		285.6
(-1.6)
P 		346.9
(1.2)
P 		132
B 382.6
(2)
P 		418.9
(3)
P 		192.5
(-3)
P 		291.4
(-0.4)
P 		334.8
(0.8)
P 		309.8
(0.1)
P 		226
C 236.3
(-3)
P 		265.7
(-1.2)
M 		260.5
(-1.5)
P 		333.9
(3)
P 		280.9
(-0.3)
P 		296.2
(0.7)
P 		98
avr 334.8
(3) 		317.7
(2) 		235.7
(-3) 		304.6
(1.2) 		300.4
(0.9) 		317.6
(2) 		99
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 82
1 2 3 4 range
A 138.5
(3)
P 		123.4
(1.5)
P 		114.1
(0.5)
P 		79.2
(-3)
P 		59
B 138.1
(3)
P 		131.8
(2.1)
P 		104.5
(-2)
P 		97.8
(-3)
M 		40
C 125
(0.6)
P 		152.6
(2.6)
P 		157.4
(3)
P 		75.6
(-3)
P 		82
avr 133.9
(2.8) 		135.9
(3) 		125.3
(1.8) 		84.2
(-3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 93
1 2 3 4 5 6 range
A 71.1
(-0.6)
P 		95.4
(3)
P 		55.3
(-3)
P 		73.1
(-0.3)
P 		86.2
(1.6)
P 		84.5
(1.4)
P 		40
B 133.1
(2.6)
P 		139.4
(3)
P 		46.7
(-3)
P 		77.2
(-1)
P 		136
(2.8)
P 		115.5
(1.5)
P 		93
C 87.6
(0.9)
P 		81.1
(-0.3)
M 		66.3
(-3)
P 		67.2
(-2.8)
P 		90.9
(1.5)
P 		99.1
(3)
P 		33
avr 97.3
(2) 		105.3
(3) 		56.1
(-3) 		72.5
(-1) 		104.4
(2.9) 		99.7
(2.3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176001_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.1655
Sequence Type Exemplar sequence
Representative Public ID E01A2.5 NCBI
Target Description E01A2.5 /REP_DB=WormBase Gene ID /WP=CE24872 /SUBMIT=ST.LOUIS /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058902
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008537 ENSEMBL cdna:SNAP chromosome:CEL140:I:4135331:4137069:-1 11/11 None
GENEFINDER00000008591 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:4135331:4137069:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058902 5/11 Cross Hyb Matching Probes None
E01A2.5 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:4135770-4137069(-) 98.27 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85462 Hypothetical protein E01A2.5 [Caenorhabditis elegans] 1.0E-142
blast CAE66717 Hypothetical protein CBG12063 [Caenorhabditis briggsae] 1.0E-128
blast NP_491303 E01A2.5 [Caenorhabditis elegans] 3.0E-81
Protein Domains
Database ID Description E-Value
Pfam IPR002761 EMBL-EBI Protein of unknown function DUF71 2.3E-78
Sequence
Target Sequence 
>C. ELEGANS:176001_AT
gtggcacttgcaaatctgcacccaccgaaagatgcaaaatcagatgaacttgattcatac
atgtatcaaagtgttggagcagatggagttgagctgtacggtgaagccatgcaacttcct
ctctatcgacgagaaatcaccggtgagccgaaaaatcaaaagtcggattacgagaaaaca
gatggagatgaagtggaggatctgttcgaattgttatgcgaagtgaaaaagcatcatcca
gaagtaaaaggagtatcggctggagcaattctttcgagttatcagaaagttcgagttgaa
gacatttgccggcggcttgatctcgttccactttgctttttatgggagagagaacaaaat
ggccttcttgccgaaatggtagaaaatggtctcgacgcgattctcatcaaagtggccgcc
attgggctcggcgagcaacatctcggaaaaacgttgtcagaaatggcaccaattatgaaa
gttcttcaggataaatatggagttcatccgtgcggtgaaggtggagaattcgagtcattt
gtacgagattgcccgcttttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGGCACTTGCAAATCTGCACCCAC 289 489 94 Antisense
ACGGTGAAGCCATGCAACTTCCTCT 690 95 191 Antisense
GTATCGGCTGGAGCAATTCTTTCGA 121 453 346 Antisense
GACATTTGCCGGCGGCTTGATCTCG 145 371 394 Antisense
TCTCGTTCCACTTTGCTTTTTATGG 549 611 414 Antisense
ATGGCCTTCTTGCCGAAATGGTAGA 348 49 452 Antisense
AAATGGTCTCGACGCGATTCTCATC 195 121 477 Antisense
TCAAAGTGGCCGCCATTGGGCTCGG 489 627 500 Antisense
GGCTCGGCGAGCAACATCTCGGAAA 426 539 518 Antisense
GGAGTTCATCCGTGCGGTGAAGGTG 164 497 592 Antisense
ATTTGTACGAGATTGCCCGCTTTTT 132 17 630 Antisense
Sequence Source Affymetrix Proprietary Database