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[176000_at]

Description C06E1.8 /REP_DB=WormBase Gene ID /WP=CE00063 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 4grp_high_8_8 > 44      6grp_total > 08      4grp_total > 52      6grp_total_sub > Decrease      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 331
1 2 3 4 range
A 329.8
(2.6)
P 		342.7
(3)
P 		221
(-0.8)
P 		149.2
(-3)
A 		194
B 296.3
(0.2)
P 		451.4
(3)
P 		230
(-1)
P 		120.9
(-3)
A 		331
C 293.7
(-0.3)
P 		439.8
(3)
P 		287.1
(-0.5)
P 		174.5
(-3)
P 		265
avr 306.6
(0.6) 		411.3
(3) 		246
(-0.8) 		148.2
(-3) 		263

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 561
1 2 3 4 5 6 range
A 666.5
(3)
P 		285
(-1.2)
P 		230.3
(-1.8)
P 		311.1
(-0.9)
P 		152.9
(-2.7)
A 		123.8
(-3)
A 		543
B 445.4
(3)
P 		275.2
(-0.4)
P 		215.8
(-1.6)
P 		329.2
(0.7)
P 		216.3
(-1.6)
P 		144.5
(-3)
A 		301
C 425.5
(3)
P 		228.8
(-0.7)
P 		275.2
(0.2)
P 		392.7
(2.4)
P 		158.2
(-2)
M 		105.5
(-3)
A 		320
avr 512.5
(3) 		263
(-0.9) 		240.4
(-1.2) 		344.3
(0.4) 		175.8
(-2.2) 		124.6
(-3) 		388
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 105
1 2 3 4 range
A 120.1
(3)
P 		74.4
(0.2)
P 		57.8
(-0.8)
P 		21.8
(-3)
A 		98
B 94.5
(1.8)
P 		111.5
(3)
P 		53.3
(-1.1)
P 		25.8
(-3)
A 		86
C 97.2
(1.2)
P 		126.4
(3)
P 		100.1
(1.4)
P 		29.4
(-3)
P 		97
avr 103.9
(3) 		104.1
(3) 		70.4
(0.4) 		25.7
(-3) 		78

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 122.9
(3)
P 		101.4
(1.6)
P 		50.2
(-1.7)
P 		78.9
(0.2)
P 		46.2
(-2)
A 		30.1
(-3)
A 		93
B 155
(3)
P 		91.6
(-0.7)
P 		52.4
(-3)
P 		87.2
(-1)
P 		87.9
(-0.9)
P 		53.9
(-2.9)
A 		103
C 157.7
(3)
P 		69.8
(-1.3)
P 		70
(-1.3)
P 		79
(-0.9)
P 		51.2
(-2.2)
M 		35.3
(-3)
A 		122
avr 145.2
(3) 		87.6
(-0.3) 		57.5
(-2) 		81.7
(-0.6) 		61.8
(-1.7) 		39.8
(-3) 		105
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 176000_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7124
Sequence Type Exemplar sequence
Representative Public ID C06E1.8 NCBI
Target Description C06E1.8 /REP_DB=WormBase Gene ID /WP=CE00063 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066491(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066491 NCBI Caenorhabditis elegans C06E1.8 (C06E1.8) mRNA, complete cds. 11/11 None
SNAP00000034819 ENSEMBL cdna:SNAP chromosome:CEL140:III:8595539:8596765:-1 11/11 None
GENEFINDER00000034831 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8595539:8597752:-1 11/11 None
C06E1.8 ENSEMBL cdna:known chromosome:CEL140:III:8595539:8597746:-1 gene:C06E1.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8595533-8597741(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C06E1.8
Entrez Gene 182317 Entrez gene
SwissProt P34303 EMBL-EBI
WormBase CE00063 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
8270 zinc ion binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27931 Hypothetical protein C06E1.8 [Caenorhabditis elegans] ref|NP_498892.1| C06E1.8 [Caenorhabditis elegans] sp|P34303|YKQ8_CAEEL Hypothetical zinc finger protein C06E1.8 in chromosome III 0.0
blast AAA27931 Hypothetical protein C06E1.8 [Caenorhabditis elegans] ref|NP_498892.1| C06E1.8 [Caenorhabditis elegans] sp|P34303|YKQ8_CAEEL Hypothetical zinc finger protein C06E1.8 in chromosome III 1.0E-148
blast CAE69275 Hypothetical protein CBG15328 [Caenorhabditis briggsae] emb|CAE69273.1| Hypothetical protein CBG15326 [Caenorhabditis briggsae] 1.0E-125
blast CAE69275 Hypothetical protein CBG15328 [Caenorhabditis briggsae] emb|CAE69273.1| Hypothetical protein CBG15326 [Caenorhabditis briggsae] 4.0E-85
blast AAK39155 Hsn abnormal migration protein 2, isoform a [Caenorhabditis elegans] ref|NP_001024363.1| HSN Abnormal Migration family member (ham-2) [Caenorhabditis elegans] 8.0E-37
Protein Domains
Database ID Description E-Value
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.9E-5
Pfam IPR007087 EMBL-EBI Zn-finger, C2H2 type 4.9E-5
Sequence
Target Sequence 
>C. ELEGANS:176000_AT
gctcttcaatcgcctattcgatctcaacctcagacaccttcatggcttgcaaatcttcca
aaacccatacctactacggcaccaatatttgtagcagattcaaaagaaaaaataaaagat
gaagtggagaagcccgatgtgtatacttcacagtcaccaacttgctcatcagtcagcttc
aagtctgatcttagtgcattccatcagttgtgttctgatcgtgctcttatatcatctcca
ttgattgatacagcttcaccatcctcatcatcttcttcttcaaggatcagtccacgtcat
gaatgcttcgactgccacgtcagcaggacaaagatattgatttctgaaaataaatgcaaa
ctgttggaacacaaaattggtacgatgcaacaagaaagtttagaagcaaatgcccaaatg
aatggattggaacaaactgtgctcagattgagaatggaagcacacgcgctccgtgagcac
aatgagctattccaaaggaaattgttagagtgtcagaatcttgccgtgaaatttcttcaa
aatgacaaagctcacgacgcctcggaaatgaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTCTTCAATCGCCTATTCGATCTC 665 299 583 Antisense
CTCAGACACCTTCATGGCTTGCAAA 408 229 611 Antisense
CATACCTACTACGGCACCAATATTT 37 215 648 Antisense
GTATACTTCACAGTCACCAACTTGC 353 451 723 Antisense
TGCTCATCAGTCAGCTTCAAGTCTG 353 581 745 Antisense
TAGTGCATTCCATCAGTTGTGTTCT 705 653 774 Antisense
TGATCGTGCTCTTATATCATCTCCA 18 567 798 Antisense
TGATTGATACAGCTTCACCATCCTC 707 563 824 Antisense
GTCATGAATGCTTCGACTGCCACGT 50 465 878 Antisense
CACGCGCTCCGTGAGCACAATGAGC 651 199 1045 Antisense
AGCTCACGACGCCTCGGAAATGAAT 603 79 1131 Antisense
Sequence Source Affymetrix Proprietary Database