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[175998_at]

Description Y50D4C.H /REP_DB=WormBase Gene ID /WP=CE26548 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 36      4grp_total > 12      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 117
1 2 3 4 range
A 70.4
(-2.1)
A 		56.2
(-3)
A 		75.9
(-1.7)
A 		147.1
(3)
A 		91
B 53.2
(-3)
A 		81.9
(3)
A 		62.5
(-1.1)
A 		74.8
(1.5)
A 		29
C 82
(3)
A 		60.9
(0.5)
A 		30.4
(-3)
A 		68.2
(1.4)
A 		52
avr 68.5
(-1.2) 		66.3
(-1.5) 		56.3
(-3) 		96.7
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 111.2
(3)
A 		12.9
(-3)
A 		82
(1.2)
A 		44.4
(-1.1)
A 		58.6
(-0.2)
A 		38.6
(-1.4)
A 		98
B 64.8
(1)
A 		84.9
(3)
A 		43.4
(-1.2)
A 		50.6
(-0.5)
A 		25.6
(-3)
A 		67.9
(1.3)
A 		59
C 36.5
(-2.7)
A 		90.3
(3)
A 		45.6
(-1.7)
A 		33.7
(-3)
A 		46.9
(-1.6)
A 		78.1
(1.7)
A 		57
avr 70.8
(3) 		62.7
(1.3) 		57
(0) 		42.9
(-3) 		43.7
(-2.8) 		61.5
(1) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 25.6
(3)
A 		12.2
(-3)
A 		19.8
(0.4)
A 		21.5
(1.2)
A 		13
B 16.9
(-0.5)
A 		20.2
(3)
A 		14.5
(-3)
A 		15.9
(-1.5)
A 		6
C 27.1
(3)
A 		17.5
(-0.5)
A 		10.6
(-3)
A 		11.5
(-2.7)
A 		17
avr 23.2
(3) 		16.6
(-1.8) 		15
(-3) 		16.3
(-2) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 20.5
(3)
A 		4.6
(-3)
A 		17.9
(2)
A 		11.3
(-0.5)
A 		17.7
(1.9)
A 		9.4
(-1.2)
A 		16
B 22.6
(1.1)
A 		28.3
(3)
A 		10.5
(-3)
A 		13.4
(-2)
A 		10.4
(-3)
A 		25.3
(2)
A 		18
C 13.5
(-1.1)
A 		27.6
(3)
A 		11.6
(-1.6)
A 		6.8
(-3)
A 		15.2
(-0.6)
A 		26.1
(2.6)
A 		21
avr 18.9
(2.1) 		20.2
(2.9) 		13.3
(-1.3) 		10.5
(-3) 		14.4
(-0.6) 		20.3
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175998_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19546
Sequence Type Exemplar sequence
Representative Public ID Y50D4C.H NCBI
Target Description Y50D4C.H /REP_DB=WormBase Gene ID /WP=CE26548 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y50D4C.H
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y50D4C.H Y50D4C.H /REP_DB=WormBase Gene ID /WP=CE26548 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070957 11/11 Negative Strand Matching Probes A 
GENEFINDER00000044742 11/11 Negative Strand Matching Probes None
Y50D4C.3 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:940586-940796(+) 90.48 100.0
Sequence
Target Sequence 
>C. ELEGANS:175998_AT
tccctgttgagatcctccgtgaaattggccgccacgtggaggtccctgctggaagaaata
gtttccggtgccacgtggcgggccttgttgctggaagttcccttgatttccacgtggcgt
ctgatgaggcgctccttgctggaaactcttctgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCCTGTTGAGATCCTCCGTGAAAT 424 597 32 Antisense
TGAGATCCTCCGTGAAATTGGCCGC 223 569 39 Antisense
CTCCGTGAAATTGGCCGCCACGTGG 155 233 46 Antisense
TGAAATTGGCCGCCACGTGGAGGTC 560 569 51 Antisense
CGTGGAGGTCCCTGCTGGAAGAAAT 449 245 66 Antisense
AAGAAATAGTTTCCGGTGCCACGTG 188 151 84 Antisense
GTTGCTGGAAGTTCCCTTGATTTCC 566 439 118 Antisense
TGGAAGTTCCCTTGATTTCCACGTG 258 547 123 Antisense
TTGATTTCCACGTGGCGTCTGATGA 617 699 134 Antisense
CCACGTGGCGTCTGATGAGGCGCTC 317 275 141 Antisense
GCTCCTTGCTGGAAACTCTTCTGAT 495 297 162 Antisense
Sequence Source Affymetrix Proprietary Database