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[175996_at]

Description Y105E8B.U /REP_DB=WormBase Gene ID /WP=CE25165 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster 6grp_highest_10_10 > 61      6grp_high1_10_10 > 27      4grp_highest_8_8 > 29      4grp_high_8_8 > 23      6grp_highest_nonorm > 80      6grp_total > 17      4grp_total > 0      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 198
1 2 3 4 range
A 287.8
(-0.1)
P 		268.2
(-1)
P 		222.5
(-3)
P 		357.9
(3)
P 		135
B 258.6
(-1.6)
P 		213.3
(-3)
P 		342.7
(0.9)
P 		411
(3)
P 		198
C 267.8
(-1.7)
P 		230.9
(-3)
P 		401.8
(3)
P 		341.7
(0.9)
P 		171
avr 271.4
(-1.5) 		237.5
(-3) 		322.3
(0.8) 		370.2
(3) 		133

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 224
1 2 3 4 5 6 range
A 235.4
(2.1)
P 		233
(1.9)
P 		246.5
(3)
P 		196.5
(-0.9)
P 		169.5
(-3)
P 		203.7
(-0.3)
P 		77
B 331.7
(3)
P 		247.8
(0.2)
P 		276.6
(1.2)
P 		148.7
(-3)
P 		160
(-2.6)
P 		203.7
(-1.2)
P 		183
C 372.8
(3)
P 		273.1
(-0.1)
P 		178
(-3)
P 		181.8
(-2.9)
P 		229.8
(-1.4)
P 		239.2
(-1.1)
P 		195
avr 313.3
(3) 		251.3
(0.3) 		233.7
(-0.5) 		175.7
(-3) 		186.4
(-2.5) 		215.5
(-1.3) 		138
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 104.8
(3)
P 		58.2
(-2.3)
P 		58.2
(-2.3)
P 		52.4
(-3)
P 		52
B 82.5
(2.1)
P 		52.7
(-3)
P 		79.4
(1.6)
P 		87.6
(3)
P 		35
C 88.6
(-0.7)
P 		66.4
(-2.4)
P 		140
(3)
P 		57.6
(-3)
P 		82
avr 92
(2.9) 		59.1
(-3) 		92.5
(3) 		65.9
(-1.8) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 102
1 2 3 4 5 6 range
A 43.4
(-3)
P 		82.9
(3)
P 		53.7
(-1.4)
P 		49.8
(-2)
P 		51.1
(-1.8)
P 		49.6
(-2.1)
P 		40
B 115.4
(3)
P 		82.5
(0.4)
P 		67.2
(-0.8)
P 		39.4
(-3)
P 		65
(-1)
P 		76
(-0.1)
P 		76
C 138.2
(3)
P 		83.3
(-0.2)
P 		45.3
(-2.5)
P 		36.6
(-3)
P 		74.4
(-0.8)
P 		80.1
(-0.4)
P 		102
avr 99
(3) 		82.9
(1.3) 		55.4
(-1.6) 		41.9
(-3) 		63.5
(-0.7) 		68.6
(-0.2) 		57
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175996_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18765
Sequence Type Exemplar sequence
Representative Public ID Y105E8B.U NCBI
Target Description Y105E8B.U /REP_DB=WormBase Gene ID /WP=CE25165 /CHR=1 /FEA=Sanger Annotation /DEF=(HINXTON)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_170951
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000013508 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:14484947:14486651:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_170951 8/11 Cross Hyb Matching Probes None
SNAP00000013344 8/11 Cross Hyb Matching Probes None
Y105E8A.19 8/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:14484967-14486582(-) 99.28 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21668 Hypothetical protein Y105E8A.19 [Caenorhabditis elegans] ref|NP_740947.2| Y105E8A.19 [Caenorhabditis elegans] dbj|BAC76736.1| tyrosyl-tRNA synthetase (cytoplasmic) [Caenorhabditis elegans] 1.0E-102
blast EAA07816 ENSANGP00000018288 [Anopheles gambiae str. PEST] ref|XP_311880.1| ENSANGP00000018288 [Anopheles gambiae str. PEST] 1.0E-22
blast XP_623127 PREDICTED: similar to GA18259-PA [Apis mellifera] ref|XP_397348.2| PREDICTED: similar to GA18259-PA [Apis mellifera] 4.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000013508 1 280-302
Sequence
Target Sequence 
>C. ELEGANS:175996_AT
gttgattccaacaattccaggatgtaatggccaaaaaatgagttgctccattcctgactt
ccttcttgatccccttgacactccgaaacagctcaaaacgaaaatcgctcgaagcttctg
tgaacctcagaatctcgatggaaacgtcgctatgcagctcgccgagcacattgtcttccc
gattctcaatggagcagctttgcacatccaacgtgctccggataatggtggtgacgtgga
ggtcacaaactacaaacagttggagcaggaatttgtgattggaacgaagaatgagcagca
gtttccacttcatccggctgatttgaagaacgcggtggttggggttattaatcgaagaaa
aaaacaaaaagcggaaaaattcgacttttcggtgtcaatttttgaatatcaaaaaattca
gaaaattttttcgacaaacctacaaaatacaacatgtagaattctgatgtttcctgtcaa
actcagattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTGATTCCAACAATTCCAGGATGT 552 437 213 Antisense
AAAATGAGTTGCTCCATTCCTGACT 380 131 247 Antisense
CACTCCGAAACAGCTCAAAACGAAA 17 199 291 Antisense
AACGAAAATCGCTCGAAGCTTCTGT 223 143 309 Antisense
CGCTCGAAGCTTCTGTGAACCTCAG 589 255 318 Antisense
GAACCTCAGAATCTCGATGGAAACG 672 343 334 Antisense
ATGGAAACGTCGCTATGCAGCTCGC 297 53 350 Antisense
TTGTCTTCCCGATTCTCAATGGAGC 643 701 383 Antisense
TTCGACTTTTCGGTGTCAATTTTTG 463 691 592 Antisense
GTAGAATTCTGATGTTTCCTGTCAA 413 457 668 Antisense
GATGTTTCCTGTCAAACTCAGATTT 334 409 678 Antisense
Sequence Source Affymetrix Proprietary Database