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[175995_at]

Description ZK112.1 /REP_DB=WormBase Gene ID /WP=CE25679 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 65      6grp_high1_10_10 > 56      4grp_highest_8_8 > 46      4grp_high_8_8 > 02      6grp_highest_nonorm > 57      6grp_total > 46      4grp_total > 14      6grp_cgc > 36      6grp_high1_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1944
1 2 3 4 range
A 3562.3
(1.5)
P 		2410.8
(-2.3)
P 		2197.8
(-3)
P 		4034.3
(3)
P 		1837
B 3817.1
(2)
P 		2262
(-3)
P 		2562.7
(-2)
P 		4117
(3)
P 		1855
C 3729.8
(2.5)
P 		2173.4
(-3)
P 		2525.8
(-1.8)
P 		3884
(3)
P 		1711
avr 3703.1
(1.9) 		2282.1
(-3) 		2428.8
(-2.5) 		4011.8
(3) 		1730

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1113
1 2 3 4 5 6 range
A 2352.1
(0.2)
P 		2533.6
(1.5)
P 		2195.2
(-0.9)
P 		2107.8
(-1.5)
P 		1898.5
(-3)
P 		2747.9
(3)
P 		849
B 2172.4
(1.9)
P 		2251.1
(3)
P 		2083.6
(0.6)
P 		1906.1
(-1.9)
P 		1825.9
(-3)
P 		2190.3
(2.1)
P 		425
C 2173.6
(0.3)
P 		2098.6
(-0.1)
P 		2172.7
(0.3)
P 		2223.1
(0.6)
P 		1634.6
(-3)
P 		2604.2
(3)
P 		970
avr 2232.7
(0.7) 		2294.4
(1.2) 		2150.5
(0) 		2079
(-0.6) 		1786.3
(-3) 		2514.1
(3) 		728
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 774
1 2 3 4 range
A 1297
(3)
P 		523.3
(-3)
P 		574.5
(-2.6)
P 		590.5
(-2.5)
P 		774
B 1217.2
(3)
P 		558.7
(-3)
P 		593.8
(-2.7)
P 		877.3
(-0.1)
P 		659
C 1234.7
(3)
P 		624.9
(-3)
P 		880.3
(-0.5)
P 		654.9
(-2.7)
P 		610
avr 1249.6
(3) 		569
(-3) 		682.9
(-2) 		707.6
(-1.8) 		681

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 468
1 2 3 4 5 6 range
A 433.6
(-3)
P 		901.1
(3)
P 		478.1
(-2.4)
P 		534.6
(-1.7)
P 		572.9
(-1.2)
P 		669
(0)
P 		468
B 755.9
(1.8)
P 		749.3
(1.7)
P 		506
(-3)
P 		504.9
(-3)
P 		741.8
(1.6)
P 		816.8
(3)
P 		312
C 805.7
(2.1)
P 		640.3
(-0.3)
P 		553
(-1.5)
P 		447.1
(-3)
P 		528.9
(-1.8)
P 		871.8
(3)
P 		425
avr 665.1
(0.5) 		763.6
(2.5) 		512.4
(-2.7) 		495.5
(-3) 		614.5
(-0.5) 		785.9
(3) 		290
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175995_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7940
Sequence Type Exemplar sequence
Representative Public ID ZK112.1 NCBI
Target Description ZK112.1 /REP_DB=WormBase Gene ID /WP=CE25679 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066287(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066287 NCBI Caenorhabditis elegans Prolyl Carboxy Peptidase like family member (pcp-1) (pcp-1) mRNA, complete cds. 11/11 None
SNAP00000038350 ENSEMBL cdna:SNAP chromosome:CEL140:III:7760763:7761123:1 9/11 None
GENEFINDER00000038355 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7760763:7761123:1 9/11 None
ZK112.1 ENSEMBL cdna:known chromosome:CEL140:III:7758653:7761295:1 gene:ZK112.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7758836-7761121(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pcp-1
Ensembl ZK112.1
Entrez Gene 176086 Entrez gene
SwissProt P34610 EMBL-EBI
WormBase CE25679 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6508 proteolysis inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8236 serine-type peptidase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA28181 Prolyl carboxy peptidase like protein 1 [Caenorhabditis elegans] ref|NP_498688.1| Prolyl Carboxy Peptidase like family member (pcp-1) [Caenorhabditis elegans] sp|P34610|PCP1_CAEEL Putative serine protease pcp-1 precursor 0.0
blast CAE57191 Hypothetical protein CBG00035 [Caenorhabditis briggsae] 0.0
blast CAE57192 Hypothetical protein CBG00036 [Caenorhabditis briggsae] 0.0
blast AAA28181 Prolyl carboxy peptidase like protein 1 [Caenorhabditis elegans] ref|NP_498688.1| Prolyl Carboxy Peptidase like family member (pcp-1) [Caenorhabditis elegans] sp|P34610|PCP1_CAEEL Putative serine protease pcp-1 precursor 6.0E-58
blast CAE57191 Hypothetical protein CBG00035 [Caenorhabditis briggsae] 7.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR008758 EMBL-EBI Peptidase S28 1.0E-87
Pfam IPR008758 EMBL-EBI Peptidase S28 3.0E-6
Sequence
Target Sequence 
>C. ELEGANS:175995_AT
gacgcagtgaaaactctctacggatatgatctttctggttcaagtaacttgattttgact
caaggacacctggatccatggtccggaggtggctacaaagttgatcaaaacaatgctgct
cgtggaatctatgtattggaaattcctggatctgctcatcatctcgatctccgtcaacca
aacacctgtgatccaaatacagttaccaatgccagattccaaatcattcaaatcttgaag
tgctgggtcgatccaaattgcaacacaatcccaacaataagtccacttccaagtatttcc
attccaaatggtgattgtaaagatgttgttggaggatatccatggggacagacgactggt
gcaactgtctcaaactctt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGCAGTGAAAACTCTCTACGGAT 291 381 1291 Antisense
GACTCAAGGACACCTGGATCCATGG 498 373 1347 Antisense
GATCCATGGTCCGGAGGTGGCTACA 259 415 1363 Antisense
AACAATGCTGCTCGTGGAATCTATG 704 133 1399 Antisense
GGAAATTCCTGGATCTGCTCATCAT 439 527 1428 Antisense
CCGTCAACCAAACACCTGTGATCCA 426 263 1461 Antisense
TACAGTTACCAATGCCAGATTCCAA 595 643 1488 Antisense
GTGCTGGGTCGATCCAAATTGCAAC 224 479 1530 Antisense
CAATCCCAACAATAAGTCCACTTCC 175 171 1556 Antisense
CACTTCCAAGTATTTCCATTCCAAA 43 197 1574 Antisense
ACTGGTGCAACTGTCTCAAACTCTT 501 97 1645 Antisense
Sequence Source Affymetrix Proprietary Database