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[175994_s_at]

Description C50C3.8 /REP_DB=WormBase Gene ID /WP=CE00124 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 87      6grp_high1_10_10 > 88      4grp_highest_8_8 > 30      4grp_high_8_8 > 07      6grp_highest_nonorm > 79      6grp_total > 78      4grp_total > 03      6grp_highest_sub > Da      6grp_cgc > 49      6grp_high1_sub > Da      6grp_cgc_sub > Da      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1066
1 2 3 4 range
A 1419.1
(-1.3)
P 		1202.5
(-3)
P 		1317.9
(-2.1)
P 		1961.4
(3)
P 		759
B 1432.1
(-1.7)
P 		1217
(-3)
P 		1338.7
(-2.3)
P 		2247.4
(3)
P 		1030
C 1390.7
(-1.4)
P 		1181.4
(-3)
P 		1466.5
(-0.9)
P 		1990.1
(3)
P 		809
avr 1414
(-1.5) 		1200.3
(-3) 		1374.4
(-1.8) 		2066.3
(3) 		866

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1658
1 2 3 4 5 6 range
A 1631.8
(-1.3)
P 		1478.9
(-2)
P 		1227.4
(-3)
P 		1402.4
(-2.3)
P 		2130.6
(0.7)
P 		2693.4
(3)
P 		1466
B 1738.8
(-1.5)
P 		1362.4
(-3)
P 		1638.3
(-1.9)
P 		1593.7
(-2.1)
P 		2053.3
(-0.3)
P 		2885.3
(3)
P 		1523
C 1375.9
(-3)
P 		1432.6
(-2.8)
P 		1462.2
(-2.6)
P 		1587.7
(-2.1)
P 		1883.1
(-0.9)
P 		2796.3
(3)
P 		1420
avr 1582.2
(-2.3) 		1424.6
(-3) 		1442.6
(-2.9) 		1527.9
(-2.5) 		2022.3
(-0.4) 		2791.7
(3) 		1367
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 256
1 2 3 4 range
A 516.7
(3)
P 		261
(-3)
P 		344.5
(-1)
P 		287.1
(-2.4)
P 		256
B 456.7
(2.3)
P 		300.6
(-3)
P 		310.2
(-2.7)
P 		478.9
(3)
P 		178
C 460.4
(1.3)
P 		339.7
(-2.9)
P 		511.1
(3)
P 		335.6
(-3)
P 		176
avr 477.9
(3) 		300.4
(-3) 		388.6
(-0) 		367.2
(-0.7) 		178

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 809
1 2 3 4 5 6 range
A 300.8
(-2.5)
P 		526
(1)
P 		267.3
(-3)
P 		355.7
(-1.6)
P 		642.9
(2.8)
P 		655.7
(3)
P 		388
B 605
(-1.2)
P 		453.5
(-2.5)
P 		397.8
(-3)
P 		422.1
(-2.8)
P 		834.2
(0.9)
P 		1075.9
(3)
P 		678
C 510
(-1.1)
P 		437.1
(-1.9)
P 		372.2
(-2.5)
P 		319.3
(-3)
P 		609.3
(-0.2)
P 		936.1
(3)
P 		617
avr 471.9
(-1.6) 		472.2
(-1.6) 		345.8
(-3) 		365.7
(-2.8) 		695.5
(0.9) 		889.2
(3) 		543
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175994_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6974
Sequence Type Exemplar sequence
Representative Public ID C50C3.8 NCBI
Target Description C50C3.8 /REP_DB=WormBase Gene ID /WP=CE00124 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066383(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066383 NCBI Caenorhabditis elegans C50C3.8 (C50C3.8) mRNA, complete cds. 11/11 None
SNAP00000020232 ENSEMBL cdna:SNAP chromosome:CEL140:III:8161788:8162981:-1 11/11 None
GENEFINDER00000020241 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8161788:8163305:-1 11/11 None
C50C3.8.1 ENSEMBL cdna:known chromosome:CEL140:III:8161370:8163305:-1 gene:C50C3.8 11/11 None
C50C3.8.2 ENSEMBL cdna:known chromosome:CEL140:III:8161370:8163307:-1 gene:C50C3.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8161783-8163244(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol bath-42
Ensembl C50C3.8
Entrez Gene 176152 Entrez gene
SwissProt P34371 EMBL-EBI
WormBase CE00124 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5515 protein binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27978 Hypothetical protein C50C3.8 [Caenorhabditis elegans] ref|NP_498784.1| C50C3.8 [Caenorhabditis elegans] sp|P34371|YLJ8_CAEEL Hypothetical protein C50C3.8 in chromosome III 0.0
blast CAE70197 Hypothetical protein CBG16671 [Caenorhabditis briggsae] 0.0
blast CAE70197 Hypothetical protein CBG16671 [Caenorhabditis briggsae] 1.0E-176
Protein Domains
Database ID Description E-Value
Pfam IPR002083 EMBL-EBI MATH 1.2E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.7E-33
Pfam IPR002083 EMBL-EBI MATH 2.9E-12
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.7E-33
Pfam IPR002083 EMBL-EBI MATH 1.2E-16
Pfam IPR000210 EMBL-EBI BTB/POZ domain 2.7E-33
Sequence
Target Sequence 
>C. ELEGANS:175994_S_AT
aagcccatcgttgcattctgggccaaaactcgccagtgttcaaaagcatgttctcatcac
caaacatgatcgaagcacagaaaggagagattcacattgaagacgccaaatatgattcgg
ttcgagcgatggtcgagttcatgtatacgggagctactgagtcacttgagtctcaaggaa
atattgacgaaatattggcaattgctgacaaatacgaagttctgatgctcaaagaccaat
gtgagcgccttatcgcacaaacaatcaacctgaaaaacgtcacacaaattgccatgtttt
ccgatacatatactgctgattacttgaagtctgctgtgattcgctttttgacgacacatc
accgtgtggttatcaaaacacaggattggatcagtctgaagaaaagtcgtcatgagctcg
ccaatgaacttctggaggctgttctgtcgacagatcaagacgatgacgatgtaacatcta
atattccaatcagtgtctctcca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGCCCATCGTTGCATTCTGGGCCA 447 149 704 Antisense
TGGGCCAAAACTCGCCAGTGTTCAA 403 553 722 Antisense
GGTCGAGTTCATGTATACGGGAGCT 628 501 834 Antisense
GGAGCTACTGAGTCACTTGAGTCTC 147 521 853 Antisense
GACCAATGTGAGCGCCTTATCGCAC 710 383 937 Antisense
GCCTTATCGCACAAACAATCAACCT 519 281 950 Antisense
AAGTCTGCTGTGATTCGCTTTTTGA 30 159 1030 Antisense
GACGACACATCACCGTGTGGTTATC 697 379 1053 Antisense
GAAAAGTCGTCATGAGCTCGCCAAT 653 353 1104 Antisense
GAACTTCTGGAGGCTGTTCTGTCGA 298 351 1129 Antisense
TAATATTCCAATCAGTGTCTCTCCA 285 635 1182 Antisense
Sequence Source Affymetrix Proprietary Database