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[175993_at]

Description C29E4.7 /REP_DB=WormBase Gene ID /WP=CE00089 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 03      6grp_high1_10_10 > 11      4grp_high_8_8 > 61      6grp_highest_nonorm > 41      6grp_total > 33      4grp_total > 59      6grp_highest_sub > De      6grp_high1_sub > De      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1928
1 2 3 4 range
A 1122.8
(0.4)
P 		1742.9
(2.4)
P 		1932
(3)
P 		84.1
(-3)
A 		1848
B 1073.9
(0.4)
P 		1859.1
(3)
P 		1711.1
(2.5)
P 		33.2
(-3)
P 		1826
C 1088.3
(0.2)
P 		1961.2
(3)
P 		1890.1
(2.8)
P 		79.3
(-3)
P 		1882
avr 1095
(0.5) 		1854.4
(3) 		1844.4
(3) 		65.5
(-3) 		1789

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 898
1 2 3 4 5 6 range
A 863.3
(1.7)
P 		655.2
(0.1)
P 		1035.8
(3)
P 		783.2
(1)
P 		432.5
(-1.7)
P 		260.4
(-3)
P 		775
B 1129.5
(2.8)
P 		826.2
(0.7)
P 		1158.3
(3)
P 		691.9
(-0.3)
P 		580
(-1)
P 		300.4
(-3)
P 		858
C 1114.6
(3)
P 		811
(0.5)
P 		844.2
(0.8)
P 		717.3
(-0.2)
P 		403.3
(-2.7)
P 		371.5
(-3)
P 		743
avr 1035.8
(3) 		764.1
(0.8) 		1012.8
(2.8) 		730.8
(0.5) 		471.9
(-1.7) 		310.8
(-3) 		725
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 652
1 2 3 4 range
A 408.8
(1.8)
P 		378.3
(1.5)
P 		505.1
(3)
P 		12.3
(-3)
A 		493
B 342.5
(1.5)
P 		459.2
(3)
P 		396.5
(2.2)
P 		7.1
(-3)
P 		452
C 360.3
(0.2)
P 		563.9
(2.1)
P 		658.8
(3)
P 		13.4
(-3)
P 		645
avr 370.5
(1.2) 		467.1
(2.4) 		520.1
(3) 		10.9
(-3) 		509

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 350
1 2 3 4 5 6 range
A 159.1
(0.4)
P 		233
(3)
P 		225.6
(2.7)
P 		198.6
(1.8)
P 		130.5
(-0.6)
P 		63.4
(-3)
P 		170
B 393
(3)
P 		275
(0.5)
P 		281.3
(0.6)
P 		183.3
(-1.5)
P 		235.6
(-0.4)
P 		112
(-3)
P 		281
C 413.1
(3)
P 		247.5
(-0.4)
P 		214.9
(-1.1)
P 		144.3
(-2.6)
P 		130.5
(-2.9)
P 		124.4
(-3)
P 		289
avr 321.7
(3) 		251.8
(1.1) 		240.6
(0.8) 		175.4
(-1) 		165.5
(-1.2) 		99.9
(-3) 		222
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175993_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6188
Sequence Type Exemplar sequence
Representative Public ID C29E4.7 NCBI
Target Description C29E4.7 /REP_DB=WormBase Gene ID /WP=CE00089 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066327(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066327 NCBI Caenorhabditis elegans C29E4.7 (C29E4.7) mRNA, complete cds. 11/11 None
SNAP00000010838 ENSEMBL cdna:SNAP chromosome:CEL140:III:7945519:7946942:-1 11/11 None
GENEFINDER00000010849 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7945519:7946942:-1 11/11 None
C29E4.7 ENSEMBL cdna:known chromosome:CEL140:III:7945519:7946942:-1 gene:C29E4.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7945516-7946940(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl C29E4.7
Entrez Gene 183000 Entrez gene
SwissProt P34345 EMBL-EBI
WormBase CE00089 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1589272_AT similar to Glutathione transferase omega 2 cfa
CANINE_2:CFAAFFX.16565.1.S1_AT similar to Glutathione transferase omega 2 cfa
CANINE_2:CFAAFFX.16565.1.S1_S_AT similar to Glutathione transferase omega 2 cfa
HU35KSUBB:RC_AA159327_AT glutathione S-transferase omega 2 hs
U133_X3P:HS.44860.0.S1_3P_AT glutathione S-transferase omega 2 hs
HG-U133_PLUS_2:227163_AT glutathione S-transferase omega 2 hs
HG-U133B:227163_AT glutathione S-transferase omega 2 hs
HG-U95B:45609_AT glutathione S-transferase omega 2 hs
HG-U95D:78614_AT Glutathione S-transferase omega 2 hs
HU35KSUBC:RC_N79836_AT Glutathione S-transferase omega 2 hs
MOE430B:1453708_A_AT glutathione S-transferase omega 2 mm
MOUSE430_2:1453708_A_AT glutathione S-transferase omega 2 mm
MG-U74CV2:169312_F_AT glutathione S-transferase omega 2 mm
MU19KSUBC:TC40831_AT Glutathione S-transferase omega 2 (Gsto2), mRNA mm
RAE230B:1384493_AT glutathione S-transferase omega 2 (predicted) rn
RAT230_2:1384493_AT glutathione S-transferase omega 2 (predicted) rn
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
8152 metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5737 cytoplasm inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4364 glutathione transferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27959 Hypothetical protein C29E4.7 [Caenorhabditis elegans] ref|NP_498728.1| C29E4.7 [Caenorhabditis elegans] sp|P34345|YK67_CAEEL Hypothetical protein C29E4.7 in chromosome III 1.0E-144
blast CAE66910 Hypothetical protein CBG12295 [Caenorhabditis briggsae] 1.0E-119
blast CAE66908 Hypothetical protein CBG12292 [Caenorhabditis briggsae] 1.0E-119
Protein Domains
Database ID Description E-Value
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 3.1E-19
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 2.9E-15
Sequence
Target Sequence 
>C. ELEGANS:175993_AT
ggaggtagtcaatctcaacgtaactgacaaacttgaatggtactggacaaaacattatca
gggaaaggctccagcagtagagcacaatggaaaagtggtcattgagtctggatttattcc
tgaatatttggatgatgcatttccagaaactcgtattcttccaactgacccgtacgaaaa
ggtgcaacaaaagctgctagcggacaggttaactgcggtagcccatgcagttccattgct
cttcgccgtcatgcgagaccgaactttgaaagatgaaaagcagcgaaaagtttttgaagt
tttgaaacaagctgaaaatctcttggccaatgatttttatgctggatctcaaccaggtta
tccagactacttatcatttccattttttgagaaaatttggtggtcagctagtttggatgg
agttgtcgatttaccaacaattgaattcccaggagaagaagaatatcctaaattgacaaa
atggttccagaaaatgatttcttcagatgttgttcaatccgtcacccaatctttggaaca
tggcgctgcattcatgaacgcatatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGTAGTCAATCTCAACGTAACT 177 505 162 Antisense
TCTTCCAACTGACCCGTACGAAAAG 710 245 318 Antisense
GGACAGGTTAACTGCGGTAGCCCAT 400 525 363 Antisense
TCTTCGCCGTCATGCGAGACCGAAC 701 617 401 Antisense
CAACCAGGTTATCCAGACTACTTAT 333 187 511 Antisense
GACTACTTATCATTTCCATTTTTTG 208 373 526 Antisense
GGTGGTCAGCTAGTTTGGATGGAGT 239 499 560 Antisense
TCAGATGTTGTTCAATCCGTCACCC 464 623 664 Antisense
TCAATCCGTCACCCAATCTTTGGAA 510 631 675 Antisense
CAATCTTTGGAACATGGCGCTGCAT 64 181 688 Antisense
GGCGCTGCATTCATGAACGCATATG 446 541 703 Antisense
Sequence Source Affymetrix Proprietary Database