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[175992_at]

Description R13A5.7 /REP_DB=WormBase Gene ID /WP=CE01379 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 74      4grp_total > 08      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 286
1 2 3 4 range
A 35
(-3)
A 		111.9
(-1.4)
A 		138.7
(-0.8)
A 		321.4
(3)
P 		286
B 74.7
(-3)
A 		80.1
(-2.8)
A 		117.7
(-1.5)
A 		251.3
(3)
P 		177
C 75
(-2.9)
A 		71.7
(-3)
A 		138.6
(-1)
A 		269.7
(3)
P 		198
avr 61.6
(-3) 		87.9
(-2.3) 		131.7
(-1.1) 		280.8
(3) 		219

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 213
1 2 3 4 5 6 range
A 101.2
(-3)
A 		158.6
(-1.1)
M 		201.5
(0.3)
P 		284.5
(3)
P 		214.4
(0.7)
P 		237.4
(1.5)
P 		183
B 132.6
(-3)
A 		195.5
(-0.5)
A 		203.1
(-0.2)
P 		282.2
(3)
P 		192.9
(-0.6)
P 		201.3
(-0.2)
P 		150
C 104.3
(-3)
A 		163.9
(-1.3)
A 		236.8
(0.8)
P 		313.8
(3)
P 		217.9
(0.3)
P 		181.7
(-0.8)
P 		210
avr 112.7
(-3) 		172.7
(-1) 		213.8
(0.4) 		293.5
(3) 		208.4
(0.2) 		206.8
(0.1) 		181
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 12.7
(-3)
A 		24.3
(-1)
A 		36.2
(1.1)
A 		47
(3)
P 		34
B 23.8
(-2.3)
A 		19.8
(-3)
A 		27.3
(-1.7)
A 		53.5
(3)
P 		34
C 24.8
(-2.1)
A 		20.6
(-3)
A 		48.3
(3)
A 		45.5
(2.4)
P 		28
avr 20.4
(-3) 		21.6
(-2.7) 		37.3
(0.6) 		48.7
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 18.7
(-3)
A 		56.4
(1.2)
M 		43.9
(-0.2)
P 		72.2
(3)
P 		64.7
(2.2)
P 		57.8
(1.4)
P 		54
B 46.1
(-3)
A 		65.1
(0.5)
A 		49.3
(-2.4)
P 		74.7
(2.3)
P 		78.4
(3)
P 		75.1
(2.4)
P 		32
C 38.7
(-3)
A 		50
(-0.9)
A 		60.3
(1.1)
P 		63.1
(1.6)
P 		70.5
(3)
P 		60.8
(1.2)
P 		32
avr 34.5
(-3) 		57.2
(0.7) 		51.2
(-0.3) 		70
(2.8) 		71.2
(3) 		64.6
(1.9) 		37
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175992_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6586
Sequence Type Exemplar sequence
Representative Public ID R13A5.7 NCBI
Target Description R13A5.7 /REP_DB=WormBase Gene ID /WP=CE01379 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066258(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066258 NCBI Caenorhabditis elegans R13A5.7 (R13A5.7) mRNA, complete cds. 11/11 None
SNAP00000038246 ENSEMBL cdna:SNAP chromosome:CEL140:III:7567754:7570017:-1 11/11 None
GENEFINDER00000038258 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7567754:7570645:-1 11/11 None
R13A5.7 ENSEMBL cdna:known chromosome:CEL140:III:7567385:7570051:-1 gene:R13A5.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7567751-7570643(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R13A5.7
Entrez Gene 176070 Entrez gene
SwissProt Q95Y91 EMBL-EBI
WormBase CE30389 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK84468 Hypothetical protein R13A5.7 [Caenorhabditis elegans] ref|NP_498659.2| R13A5.7 [Caenorhabditis elegans] 0.0
blast CAE64447 Hypothetical protein CBG09154 [Caenorhabditis briggsae] 1.0E-17
blast CAE64447 Hypothetical protein CBG09154 [Caenorhabditis briggsae] 2.0E-17
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000038258 1 12-34
Sequence
Target Sequence 
>C. ELEGANS:175992_AT
tattatctcgctggatgcctcatattgacaaagttgagcaaatgaacattggcaatgttc
gcagcgtggaacagcatcgaaaatgcttaaaaatcttcagaacttatttcgaaggaaaga
ctgaatcctgggctggtgagacaatgccactttccctgatcaatgagcttcgcagaatga
ttccaagcacatcacttcagagaacatcagttccgattgcccatgttttccgatggatta
agggatggatcattggtcttcaaggatacaaacatatcactcaagtctattacaacaatc
cggctttccgcatgaacaaaggagtattccgagtttttctcaaaattatggacgacgtcg
aaaattccgagttgattctcaagaactttgatggaaaacgcgccaagctatacgtcacca
gctatggtgggctcaacttccaagtcattaccaaaaattttgaaggacatgtgaactgtg
atccctctagacttccattcagtaccgaaaacctcgcagatgacgtttccaaagagttac
attatctgggactcgactatgctgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TATTATCTCGCTGGATGCCTCATAT 147 661 854 Antisense
GCTGGTGAGACAATGCCACTTTCCC 64 295 985 Antisense
CCACTTTCCCTGATCAATGAGCTTC 541 273 1000 Antisense
AACATCAGTTCCGATTGCCCATGTT 64 139 1056 Antisense
TATTACAACAATCCGGCTTTCCGCA 22 661 1141 Antisense
GAAAACGCGCCAAGCTATACGTCAC 175 353 1247 Antisense
ATGGTGGGCTCAACTTCCAAGTCAT 27 51 1277 Antisense
GACATGTGAACTGTGATCCCTCTAG 476 369 1319 Antisense
CCTCTAGACTTCCATTCAGTACCGA 278 267 1337 Antisense
ACCTCGCAGATGACGTTTCCAAAGA 77 89 1364 Antisense
TTATCTGGGACTCGACTATGCTGAA 204 679 1395 Antisense
Sequence Source Affymetrix Proprietary Database