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[175989_at]

Description D2007.2 /REP_DB=WormBase Gene ID /WP=CE00127 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 84      6grp_high1_10_10 > 56      4grp_highest_8_8 > 22      4grp_high_8_8 > 07      6grp_highest_nonorm > 91      6grp_total > 47      4grp_total > 01      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 297
1 2 3 4 range
A 218.5
(-1.7)
P 		151.9
(-3)
P 		226.3
(-1.5)
P 		448.5
(3)
P 		297
B 198.3
(-2.4)
P 		177.2
(-3)
P 		251.5
(-0.7)
P 		375
(3)
P 		198
C 264.3
(-2.2)
P 		310.3
(-0.7)
P 		241.4
(-3)
P 		419.6
(3)
P 		178
avr 227
(-2.6) 		213.1
(-3) 		239.7
(-2.2) 		414.4
(3) 		201

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 195
1 2 3 4 5 6 range
A 136.9
(-2.1)
P 		236.9
(2.1)
P 		204.3
(0.7)
P 		116.4
(-3)
P 		187.7
(0)
P 		257.1
(3)
P 		141
B 212.1
(3)
P 		186.3
(1)
P 		205.4
(2.5)
P 		177.7
(0.3)
P 		135.6
(-3)
P 		189.7
(1.2)
P 		77
C 310.9
(3)
P 		258.3
(0.6)
P 		177.1
(-3)
P 		292.7
(2.2)
P 		249.6
(0.3)
P 		263
(0.9)
P 		134
avr 220
(0.8) 		227.2
(1.8) 		195.6
(-2.4) 		195.6
(-2.4) 		191
(-3) 		236.6
(3) 		46
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 56
1 2 3 4 range
A 79.6
(3)
P 		33
(-3)
P 		59.2
(0.4)
P 		65.7
(1.2)
P 		47
B 63.2
(0.2)
P 		43.8
(-3)
P 		58.3
(-0.6)
P 		79.9
(3)
P 		36
C 87.5
(2.4)
P 		89.2
(3)
P 		84.1
(1.3)
P 		70.8
(-3)
P 		18
avr 76.8
(3) 		55.3
(-3) 		67.2
(0.3) 		72.1
(1.7) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 25.2
(-3)
P 		84.3
(3)
P 		44.5
(-1)
P 		29.5
(-2.6)
P 		56.6
(0.2)
P 		62.6
(0.8)
P 		59
B 73.8
(3)
P 		62
(0.3)
P 		49.9
(-2.4)
P 		47.1
(-3)
P 		55.1
(-1.2)
P 		70.7
(2.3)
P 		27
C 115.3
(3)
P 		78.8
(-0.1)
P 		45.1
(-3)
P 		58.9
(-1.8)
P 		80.8
(0.1)
P 		88.1
(0.7)
P 		70
avr 71.4
(2.3) 		75
(3) 		46.5
(-2.7) 		45.2
(-3) 		64.2
(0.8) 		73.8
(2.8) 		30
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175989_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6563
Sequence Type Exemplar sequence
Representative Public ID D2007.2 NCBI
Target Description D2007.2 /REP_DB=WormBase Gene ID /WP=CE00127 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066379(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066379 NCBI Caenorhabditis elegans D2007.2 (D2007.2) mRNA, complete cds. 11/11 None
GENEFINDER00000026071 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8148896:8154432:1 11/11 None
SNAP00000026069 ENSEMBL cdna:SNAP chromosome:CEL140:III:8152390:8154432:1 11/11 None
D2007.2 ENSEMBL cdna:known chromosome:CEL140:III:8152390:8154432:1 gene:D2007.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8152385-8154428(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2007.2
Entrez Gene 183938 Entrez gene
SwissProt P34376 EMBL-EBI
WormBase CE00127 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5198 structural molecule activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAA27998 Hypothetical protein D2007.2 [Caenorhabditis elegans] ref|NP_498780.1| D2007.2 [Caenorhabditis elegans] sp|P34376|YLM2_CAEEL Hypothetical protein D2007.2 in chromosome III 6.0E-92
blast AAA27998 Hypothetical protein D2007.2 [Caenorhabditis elegans] ref|NP_498780.1| D2007.2 [Caenorhabditis elegans] sp|P34376|YLM2_CAEEL Hypothetical protein D2007.2 in chromosome III 6.0E-88
blast CAE70200 Hypothetical protein CBG16675 [Caenorhabditis briggsae] 1.0E-87
blast CAE70200 Hypothetical protein CBG16675 [Caenorhabditis briggsae] 1.0E-83
blast AAA28000 Hypothetical protein D2007.3 [Caenorhabditis elegans] ref|NP_498779.1| D2007.3 [Caenorhabditis elegans] sp|P34377|YLM3_CAEEL Hypothetical protein D2007.3 in chromosome III 4.0E-18
blast CAB02671 Hypothetical protein F58A3.4 [Caenorhabditis elegans] ref|NP_509840.1| F58A3.4 [Caenorhabditis elegans] 3.0E-9
Protein Domains
Database ID Description E-Value
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.2E-28
Pfam IPR000535 EMBL-EBI Major sperm protein (MSP) domain 2.2E-28
Sequence
Target Sequence 
>C. ELEGANS:175989_AT
ttttgggacggctcgattgacacctggaagacaaactggaagacagacacaacaacagat
tagtgctccagaaccaatgatagctattgctctctcggatatggagtacctaatgcggtc
ggctagatcaagcagaagctcaggaagatcagaacgccagccaggatgcacatgctgctg
ccacattgctgctggggttactgtaattccacgtgtcgcccgtttttcaatcgaaggagg
actctcaacacacacccttatgaatcattctgataatcggatagcagtaaaaatcacatg
cagtgacaacaatatgtacagagtgacacctgtatatgcaactgttgagcctggacaaag
tcttccacttcatatcgcccgaattaccagtgacctaatcaaacgtgatcgtctctgtgt
caatattctcgaagcagatggcaataaggaagctcgcgaaattttcaaaaagaacgcgaa
tacacgtgcaccagcttcaatcaata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTTGGGACGGCTCGATTGACACCT 232 669 45 Antisense
ATGATAGCTATTGCTCTCTCGGATA 298 47 121 Antisense
GAGTACCTAATGCGGTCGGCTAGAT 521 397 148 Antisense
TCAGAACGCCAGCCAGGATGCACAT 523 623 193 Antisense
TGCCACATTGCTGCTGGGGTTACTG 12 587 223 Antisense
CGAAGGAGGACTCTCAACACACACC 408 253 276 Antisense
AACACACACCCTTATGAATCATTCT 426 135 291 Antisense
GAGCCTGGACAAAGTCTTCCACTTC 683 385 391 Antisense
TCCACTTCATATCGCCCGAATTACC 527 587 408 Antisense
GATCGTCTCTGTGTCAATATTCTCG 117 419 451 Antisense
ACACGTGCACCAGCTTCAATCAATA 591 109 526 Antisense
Sequence Source Affymetrix Proprietary Database