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[175987_at]

Description Y5H2B.6 /REP_DB=WormBase Gene ID /WP=CE21315 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 03      4grp_total > 39      6grp_cgc > 41      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 76
1 2 3 4 range
A 65.7
(3)
A 		4.4
(-3)
A 		31
(-0.4)
A 		64.9
(2.9)
A 		61
B 50.3
(0.4)
A 		52.7
(0.7)
A 		72.3
(3)
A 		21.7
(-3)
A 		51
C 80.3
(3)
A 		52.7
(0.6)
A 		10.5
(-3)
A 		44.9
(-0)
A 		70
avr 65.4
(3) 		36.6
(-3) 		37.9
(-2.7) 		43.8
(-1.5) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 55
1 2 3 4 5 6 range
A 57.2
(2.7)
A 		44.2
(-0.1)
A 		30.4
(-3)
A 		58.5
(3)
A 		36.7
(-1.7)
A 		34.7
(-2.1)
A 		28
B 34.8
(0.9)
A 		51
(3)
A 		18.9
(-1.1)
A 		26.8
(-0.1)
A 		8.1
(-2.5)
A 		4
(-3)
A 		47
C 44
(3)
A 		30.7
(0.3)
A 		14.9
(-2.9)
A 		14.6
(-3)
A 		41.8
(2.6)
A 		26.1
(-0.7)
A 		29
avr 45.3
(3) 		42
(2.2) 		21.4
(-3) 		33.3
(-0) 		28.9
(-1.1) 		21.6
(-2.9) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 26
1 2 3 4 range
A 23.9
(3)
A 		1
(-3)
A 		8.1
(-1.1)
A 		9.5
(-0.8)
A 		23
B 16.1
(2.7)
A 		13
(1.2)
A 		16.7
(3)
A 		4.6
(-3)
A 		12
C 26.6
(3)
A 		15.2
(0)
A 		3.7
(-3)
A 		7.6
(-2)
A 		23
avr 22.2
(3) 		9.7
(-2) 		9.5
(-2.1) 		7.2
(-3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10.6
(-0.4)
A 		15.7
(3)
A 		6.6
(-3)
A 		14.8
(2.4)
A 		11.1
(-0)
A 		8.5
(-1.7)
A 		9
B 12.1
(1.1)
A 		17
(3)
A 		4.6
(-1.8)
A 		7.1
(-0.8)
A 		3.3
(-2.3)
A 		1.5
(-3)
A 		16
C 16.3
(3)
A 		9.4
(-0.1)
A 		3.8
(-2.6)
A 		2.9
(-3)
A 		13.5
(1.7)
A 		8.7
(-0.4)
A 		13
avr 13
(2.3) 		14
(3) 		5
(-3) 		8.3
(-0.8) 		9.3
(-0.1) 		6.2
(-2.2) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175987_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15884
Sequence Type Exemplar sequence
Representative Public ID Y5H2B.6 NCBI
Target Description Y5H2B.6 /REP_DB=WormBase Gene ID /WP=CE21315 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071198(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071198 NCBI Caenorhabditis elegans CYtochrome P450 family member (cyp-33C12) (cyp-33C12) mRNA, complete cds. 11/11 None
SNAP00000028130 ENSEMBL cdna:SNAP chromosome:CEL140:V:2202003:2204211:-1 11/11 None
GENEFINDER00000028135 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:2196717:2204211:-1 11/11 None
Y5H2B.6 ENSEMBL cdna:known chromosome:CEL140:V:2202003:2204211:-1 gene:Y5H2B.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2202002-2204211(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol cyp-33C12
Ensembl Y5H2B.6
Entrez Gene 189364 Entrez gene
SwissProt Q9N4Q4 EMBL-EBI
WormBase CE21315 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
4497 monooxygenase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503599 CYtochrome P450 family member (cyp-33C12) [Caenorhabditis elegans] gb|AAF59628.1| Cytochrome p450 family protein 33C12 [Caenorhabditis elegans] 0.0
blast CAE58166 Hypothetical protein CBG01257 [Caenorhabditis briggsae] 0.0
blast NP_503598 CYtochrome P450 family member (cyp-32B1) [Caenorhabditis elegans] gb|AAF59629.2| Cytochrome p450 family protein 32B1 [Caenorhabditis elegans] 0.0
blast CAE58167 Hypothetical protein CBG01258 [Caenorhabditis briggsae] 0.0
blast AAB65888 Cytochrome p450 family protein 33C4 [Caenorhabditis elegans] ref|NP_503612.1| CYtochrome P450 family member (cyp-33C4) [Caenorhabditis elegans] 1.0E-165
Protein Families
Method ID Description E-Value
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-119
p450 CP1B_MOUSE Animalia; CYP1B-1; mou; CP1B_MOUSE; Mus musculus; Q64429 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR001128 EMBL-EBI Cytochrome P450 4.5E-88
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.1E-75
Pfam IPR001128 EMBL-EBI Cytochrome P450 5.0E-106
Pfam IPR001128 EMBL-EBI Cytochrome P450 1.1E-10
Sequence
Target Sequence 
>C. ELEGANS:175987_AT
gcgccagctattggcaagcacctgccaggaaaatctgtggaagatttactcgcagagttc
acagtggacttttacaagttcttcaatcaccaaatcgaagagcaccgctccaaaatagac
tttgactctgaggaaagcctggactacgcagaagcctacctcaaagagcagcgaaaacaa
gaagctcaaggagaattcgagctgttctctacgaagcagctctccaacacatgctttgat
ctctggttcgccgggctctccacaacacacatcacactgacatggattgtcggacatgtt
ctgaactatccagatgttcagcggaaattgcacaaagagctggatgaggtgatcgggagt
gataggttgatcacgaacgatgataagaacaaccttccctacttgaatgcggtgatcaat
gaatctcaacgatgcgcgaatattgtcccgatcaaccagatccacagtacttcaagagat
actgtaataaatgggattacggtgaagaagggcaccggtgtaattccccagatcagtgcg
att

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCGCCAGCTATTGGCAAGCACCTGC 256 281 664 Antisense
TACTCGCAGAGTTCACAGTGGACTT 344 647 710 Antisense
AGAGCACCGCTCCAAAATAGACTTT 295 69 762 Antisense
AAGCCTGGACTACGCAGAAGCCTAC 412 147 798 Antisense
GCTGTTCTCTACGAAGCAGCTCTCC 669 293 864 Antisense
ACACATGCTTTGATCTCTGGTTCGC 489 109 890 Antisense
GATTGTCGGACATGTTCTGAACTAT 650 433 948 Antisense
CAACCTTCCCTACTTGAATGCGGTG 84 185 1053 Antisense
GATGCGCGAATATTGTCCCGATCAA 417 415 1094 Antisense
ATCAACCAGATCCACAGTACTTCAA 381 27 1114 Antisense
TGTAATTCCCCAGATCAGTGCGATT 143 557 1182 Antisense
Sequence Source Affymetrix Proprietary Database