[Home] | [Total List]

[175986_at]

Description K12H4.2 /REP_DB=WormBase Gene ID /WP=CE00267 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 77      6grp_high1_10_10 > 87      4grp_highest_8_8 > 14      4grp_high_8_8 > 14      6grp_highest_nonorm > 91      6grp_total > 76      4grp_total > 09      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 211
1 2 3 4 range
A 88.6
(-3)
P 		144.2
(-1.4)
P 		93.9
(-2.8)
P 		300
(3)
P 		211
B 101.6
(-3)
P 		113.5
(-2.4)
P 		115.1
(-2.3)
P 		222.3
(3)
P 		121
C 99.1
(-3)
P 		98.1
(-3)
P 		150.6
(-0.8)
P 		238.4
(3)
P 		140
avr 96.4
(-3) 		118.6
(-2.2) 		119.9
(-2.1) 		253.6
(3) 		157

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 172
1 2 3 4 5 6 range
A 161.3
(-1.7)
P 		134.2
(-3)
P 		185.7
(-0.5)
P 		193.9
(-0.1)
P 		188.9
(-0.3)
P 		255.8
(3)
P 		122
B 145.8
(-3)
P 		171.4
(-2)
P 		159.8
(-2.5)
P 		176.9
(-1.8)
P 		193.4
(-1.2)
P 		306.1
(3)
P 		160
C 171.7
(-1.3)
P 		181
(-0.9)
P 		139.6
(-3)
P 		214.5
(0.9)
P 		170.7
(-1.4)
P 		256
(3)
P 		116
avr 159.6
(-3) 		162.2
(-2.9) 		161.7
(-2.9) 		195.1
(-1.1) 		184.3
(-1.7) 		272.6
(3) 		113
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 32.3
(-0.6)
P 		31.3
(-0.9)
P 		24.5
(-3)
P 		43.9
(3)
P 		19
B 32.4
(-1.3)
P 		28
(-2.6)
P 		26.7
(-3)
P 		47.4
(3)
P 		21
C 32.8
(-1.9)
P 		28.2
(-3)
P 		52.5
(3)
P 		40.2
(-0)
P 		24
avr 32.5
(-1.6) 		29.2
(-3) 		34.6
(-0.8) 		43.8
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 85
1 2 3 4 5 6 range
A 29.7
(-3)
P 		47.7
(0.3)
P 		40.4
(-1)
P 		49.2
(0.6)
P 		57
(2)
P 		62.3
(3)
P 		33
B 50.7
(-2.1)
P 		57.1
(-1.5)
P 		38.8
(-3)
P 		46.8
(-2.4)
P 		78.6
(0.2)
P 		114.2
(3)
P 		75
C 63.7
(0.4)
P 		55.2
(-0.6)
P 		35.5
(-3)
P 		43.1
(-2.1)
P 		55.3
(-0.6)
P 		85.7
(3)
P 		50
avr 48
(-1.8) 		53.3
(-1.2) 		38.2
(-3) 		46.4
(-2) 		63.6
(0.1) 		87.4
(3) 		49
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175986_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6018
Sequence Type Exemplar sequence
Representative Public ID K12H4.2 NCBI
Target Description K12H4.2 /REP_DB=WormBase Gene ID /WP=CE00267 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066356(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066356 NCBI Caenorhabditis elegans K12H4.2 (K12H4.2) mRNA, complete cds. 10/11 None
SNAP00000000455 ENSEMBL cdna:SNAP chromosome:CEL140:III:8047635:8048302:1 10/11 None
GENEFINDER00000000468 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8047635:8048302:1 10/11 None
K12H4.2 ENSEMBL cdna:known chromosome:CEL140:III:8047605:8048302:1 gene:K12H4.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8047602-8048300(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl K12H4.2
Entrez Gene 176135 Entrez gene
SwissProt P34523 EMBL-EBI
WormBase CE38528 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_498757 K12H4.2 [Caenorhabditis elegans] gb|AAA28098.2| Hypothetical protein K12H4.2 [Caenorhabditis elegans] 1.0E-104
blast P34523 Hypothetical protein K12H4.2 in chromosome III 1.0E-104
blast P34523 Hypothetical protein K12H4.2 in chromosome III 1.0E-102
blast NP_498757 K12H4.2 [Caenorhabditis elegans] gb|AAA28098.2| Hypothetical protein K12H4.2 [Caenorhabditis elegans] 7.0E-99
blast CAE75066 Hypothetical protein CBG22981 [Caenorhabditis briggsae] 5.0E-47
Protein Domains
Database ID Description E-Value
Pfam IPR004394 EMBL-EBI Iojap-related protein 1.3E-47
Pfam IPR004394 EMBL-EBI Iojap-related protein 1.3E-47
Sequence
Target Sequence 
>C. ELEGANS:175986_AT
aatgcttacacgattcacacgacttcgtccaattctacagttacgatatcttgctcaaaa
ttcgcatatcgaagaggaatatttcgaagaattagagccaactggaatcatttccagtca
cgaaacaagtcaagaacctccaaaacggacaggattcagaagccagaatttgtcagaaga
cgctgattttgtagagaatgtggtcggagctttgactgatcaaagagcaaaagatgtatt
tgttgtaaaatcagaagaaacagaaatgacaccgtatacacataagataatttgctcagc
attcaattcgcgacaagcttcagcaatttctgaaaatcttcgatctcttctaaaaattga
cggagtgtcgaatggatccatgtcacatgcacgaaggagcacaaaacgaagcaatggatg
gtatgtcagtgaggtggaaagagttcaggtgcacgtaatgagtgaagaatgccgtgagaa
gtacgatttggaagcaatttgggctggcgatgatcgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATGCTTACACGATTCACACGACTT 69 167 42 Antisense
ACACGACTTCGTCCAATTCTACAGT 598 109 58 Antisense
TCTACAGTTACGATATCTTGCTCAA 70 615 75 Antisense
GGAATCATTTCCAGTCACGAAACAA 558 533 145 Antisense
GAACCTCCAAAACGGACAGGATTCA 273 345 175 Antisense
TGTGGTCGGAGCTTTGACTGATCAA 467 555 240 Antisense
ATTTGCTCAGCATTCAATTCGCGAC 661 17 331 Antisense
TCAATTCGCGACAAGCTTCAGCAAT 557 633 344 Antisense
TTCTGAAAATCTTCGATCTCTTCTA 665 693 369 Antisense
GAATGGATCCATGTCACATGCACGA 171 333 411 Antisense
GCAATTTGGGCTGGCGATGATCGGA 61 323 535 Antisense
Sequence Source Affymetrix Proprietary Database