[Home] | [Total List]

[175985_at]

Description C02D5.3 /REP_DB=WormBase Gene ID /WP=CE00035 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 39      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 17.7
(3)
A 		8.8
(-0.8)
A 		3.7
(-3)
A 		7.3
(-1.5)
A 		14
B 41.4
(3)
A 		5.5
(-2.8)
A 		4.4
(-3)
A 		22.7
(-0)
A 		37
C 40.7
(3)
A 		15.1
(-1.8)
A 		8.4
(-3)
A 		13.3
(-2.1)
A 		32
avr 33.3
(3) 		9.8
(-2.1) 		5.5
(-3) 		14.4
(-1.1) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 148.9
(3)
P 		56.6
(-0.9)
A 		58.9
(-0.8)
A 		47.3
(-1.3)
A 		8.1
(-3)
A 		34.2
(-1.9)
A 		141
B 125.7
(3)
P 		28.1
(-2)
A 		8.5
(-3)
A 		20.6
(-2.4)
A 		28
(-2)
A 		40.6
(-1.4)
A 		117
C 107.8
(3)
P 		43.7
(-0.7)
A 		4.4
(-3)
A 		74
(1)
A 		25.7
(-1.8)
A 		65.5
(0.5)
A 		103
avr 127.5
(3) 		42.8
(-1.8) 		23.9
(-2.8) 		47.3
(-1.5) 		20.6
(-3) 		46.8
(-1.5) 		107
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 6.4
(3)
A 		1.9
(-2)
A 		1
(-3)
A 		1.1
(-2.9)
A 		5
B 13.2
(3)
A 		1.4
(-2.8)
A 		1
(-3)
A 		4.8
(-1.1)
A 		12
C 13.5
(3)
A 		4.4
(-1.8)
A 		2.9
(-2.6)
A 		2.2
(-3)
A 		11
avr 11
(3) 		2.6
(-2.4) 		1.6
(-3) 		2.7
(-2.3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 27.4
(3)
P 		20.1
(1.2)
A 		12.8
(-0.5)
A 		12
(-0.7)
A 		2.4
(-3)
A 		8.3
(-1.6)
A 		25
B 43.7
(3)
P 		9.3
(-2)
A 		2.1
(-3)
A 		5.5
(-2.5)
A 		11.4
(-1.7)
A 		15.1
(-1.1)
A 		42
C 40
(3)
P 		13.3
(-1.1)
A 		1.1
(-3)
A 		14.9
(-0.9)
A 		8.3
(-1.9)
A 		21.9
(0.2)
A 		39
avr 37
(3) 		14.2
(-1.3) 		5.3
(-3) 		10.8
(-2) 		7.4
(-2.6) 		15.1
(-1.1) 		32
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175985_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8101
Sequence Type Exemplar sequence
Representative Public ID C02D5.3 NCBI
Target Description C02D5.3 /REP_DB=WormBase Gene ID /WP=CE00035 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_181976
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012229 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8552491:8559546:1 10/11 None
SNAP00000012226 ENSEMBL cdna:SNAP chromosome:CEL140:III:8554582:8555585:1 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8552485-8555580(+) 97.46 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27914 Hypothetical protein C02D5.2 [Caenorhabditis elegans] ref|NP_498884.1| C02D5.2 [Caenorhabditis elegans] sp|P34276|YKJ2_CAEEL Hypothetical protein C02D5.2 in chromosome III 1.0E-127
blast CAE71236 Hypothetical protein CBG18106 [Caenorhabditis briggsae] 1.0E-104
blast AAO12454 Hypothetical protein C02D5.3 [Caenorhabditis elegans] ref|NP_871705.2| C02D5.3 [Caenorhabditis elegans] sp|P34277|YKJ3_CAEEL Hypothetical protein C02D5.3 in chromosome III 1.0E-101
blast CAE71235 Hypothetical protein CBG18105 [Caenorhabditis briggsae] 7.0E-83
blast AAO12454 Hypothetical protein C02D5.3 [Caenorhabditis elegans] ref|NP_871705.2| C02D5.3 [Caenorhabditis elegans] sp|P34277|YKJ3_CAEEL Hypothetical protein C02D5.3 in chromosome III 8.0E-82
blast CAB07572 Hypothetical protein F13A7.10 [Caenorhabditis elegans] ref|NP_507142.1| Glutathione S-Transferase family member (gst-44) [Caenorhabditis elegans] 3.0E-73
Protein Domains
Database ID Description E-Value
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 1.5E-7
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 3.2E-6
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.1E-13
Pfam IPR004911 EMBL-EBI Gamma interferon inducible lysosomal thiol reductase GILT 4.1E-59
Pfam IPR004046 EMBL-EBI Glutathione S-transferase, C-terminal 0.0015
Pfam IPR004045 EMBL-EBI Glutathione S-transferase, N-terminal 1.1E-13
Sequence
Target Sequence 
>C. ELEGANS:175985_AT
agaagcatgtcagtcctatcaggattaaacactaaagttgtcaaaaatggtgatccagct
ccagctccaccagcttcaggaaccattcgtatctacaatatgcgatattgcccatgggct
caacgtgctctaatctttgcgtctctcaaaaagatcccgaccgaagtaatcaacatccat
ttggatcaaaaaccagattggtttttcacgaaacattacaaaggacaagttccagcacta
gagcacgacgagggaaagaaaattgtgattgagtcagctgcacgaaatattttaatattg
aaactaatcagtttaattaaaattaatttaatatttaaatcttcaggaacatcaaaacca
ggatttgtcgattatctcatatatccgaacattcaacgtgctttctggacttcccatatc
atcaaggatttcccattaaaagtagaatcgttcccaggaccaaactatccgaaactatct
aaatggtataaaagattggattcaattccagaagttattgctaccagccaaccaact

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGAAGCATGTCAGTCCTATCAGGAT 109 75 550 Antisense
TCCACCAGCTTCAGGAACCATTCGT 363 587 615 Antisense
TATTGCCCATGGGCTCAACGTGCTC 129 663 655 Antisense
CAACGTGCTCTAATCTTTGCGTCTC 420 187 670 Antisense
ATCCCGACCGAAGTAATCAACATCC 5 39 703 Antisense
AGTTCCAGCACTAGAGCACGACGAG 108 65 777 Antisense
GTGATTGAGTCAGCTGCACGAAATA 426 485 814 Antisense
ACATTCAACGTGCTTTCTGGACTTC 422 105 938 Antisense
TCTGGACTTCCCATATCATCAAGGA 589 607 953 Antisense
GTAGAATCGTTCCCAGGACCAAACT 81 457 991 Antisense
AGTTATTGCTACCAGCCAACCAACT 591 63 1062 Antisense
Sequence Source Affymetrix Proprietary Database