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[175984_at]

Description Y50D4C.C /REP_DB=WormBase Gene ID /WP=CE26545 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 90      4grp_total > 63      6grp_cgc > 96      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 96
1 2 3 4 range
A 82.3
(3)
A 		17.8
(-3)
A 		49.7
(-0)
A 		21.8
(-2.6)
A 		65
B 82.7
(1.5)
A 		97.5
(2.4)
A 		106.6
(3)
P 		10.3
(-3)
A 		96
C 46.5
(-1.4)
A 		26.6
(-3)
A 		66.6
(0.2)
A 		101
(3)
A 		74
avr 70.5
(2.2) 		47.3
(-2.4) 		74.3
(3) 		44.4
(-3) 		30

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 65
1 2 3 4 5 6 range
A 54.6
(2.8)
A 		12.3
(-2.5)
A 		7.9
(-3)
A 		55.9
(3)
A 		53.3
(2.7)
A 		53.9
(2.8)
A 		48
B 68.6
(2.5)
A 		72.4
(3)
A 		23.5
(-3)
A 		57.7
(1.2)
A 		56.5
(1)
A 		55.3
(0.9)
A 		49
C 46.4
(-1.1)
A 		39.6
(-3)
A 		57.8
(2.1)
A 		61.2
(3)
A 		43
(-2.1)
A 		41.1
(-2.6)
A 		22
avr 56.5
(2.6) 		41.4
(-0.5) 		29.7
(-3) 		58.3
(3) 		50.9
(1.4) 		50.1
(1.3) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 30
(3)
A 		3.9
(-2.8)
A 		13
(-0.8)
A 		3.2
(-3)
A 		27
B 26.4
(3)
A 		24.1
(2.4)
A 		24.7
(2.6)
P 		2.2
(-3)
A 		24
C 15.4
(-0)
A 		7.7
(-3)
A 		23.2
(3)
A 		17
(0.6)
A 		16
avr 23.9
(3) 		11.9
(-1.4) 		20.3
(1.7) 		7.5
(-3) 		16

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 10.1
(0.5)
A 		4.4
(-1.9)
A 		1.7
(-3)
A 		14.2
(2.2)
A 		16.1
(3)
A 		13.1
(1.8)
A 		14
B 23.9
(2.9)
A 		24.1
(3)
A 		5.7
(-3)
A 		15.3
(0.1)
A 		22.9
(2.6)
A 		20.6
(1.9)
A 		18
C 17.2
(3)
A 		12.1
(-3)
A 		14.7
(0.1)
A 		12.3
(-2.8)
A 		13.9
(-0.9)
A 		13.8
(-1)
A 		5
avr 17.1
(2.7) 		13.5
(0.6) 		7.4
(-3) 		13.9
(0.8) 		17.6
(3) 		15.8
(1.9) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175984_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19506
Sequence Type Exemplar sequence
Representative Public ID Y50D4C.C NCBI
Target Description Y50D4C.C /REP_DB=WormBase Gene ID /WP=CE26545 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y50D4C.C
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y50D4C.C Y50D4C.C /REP_DB=WormBase Gene ID /WP=CE26545 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070959 11/11 Negative Strand Matching Probes A 
SNAP00000044736 11/11 Negative Strand Matching Probes None
GENEFINDER00000044744 11/11 Negative Strand Matching Probes None
Y50D4C.1a 11/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:992782-992974(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175984_AT
atgggcttcgttgcatctgaaacagaccattttttggcggccgccgatccaaccgatcca
ccattcgatgatccacatccattcgtcgacgtcgccgtaccacatccgctatccgatgat
ccattgctcgtatttgatttcgaatcaactgcatccgatttc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGGCTTCGTTGCATCTGAAACAG 182 51 13 Antisense
GGCTTCGTTGCATCTGAAACAGACC 526 535 16 Antisense
GAAACAGACCATTTTTTGGCGGCCG 537 347 31 Antisense
CCGATCCACCATTCGATGATCCACA 145 265 65 Antisense
TCCACCATTCGATGATCCACATCCA 466 589 69 Antisense
CGATGATCCACATCCATTCGTCGAC 425 249 78 Antisense
CACATCCGCTATCCGATGATCCATT 63 191 113 Antisense
GCTATCCGATGATCCATTGCTCGTA 689 303 120 Antisense
GATCCATTGCTCGTATTTGATTTCG 15 417 130 Antisense
TGATTTCGAATCAACTGCATCCGAT 248 565 147 Antisense
TTTCGAATCAACTGCATCCGATTTC 196 671 150 Antisense
Sequence Source Affymetrix Proprietary Database