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[175983_at]

Description T05A8.7 /REP_DB=WormBase Gene ID /WP=CE25979 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 14      4grp_total > 44      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 10
(-3)
A 		17.1
(3)
A 		12.9
(-0.5)
A 		11.3
(-1.9)
A 		7
B 15.4
(3)
A 		10
(-3)
A 		10.8
(-2.1)
A 		13
(0.3)
A 		5
C 12.9
(-0.2)
A 		18.3
(3)
A 		8.1
(-3)
A 		9.2
(-2.4)
A 		10
avr 12.8
(-0.1) 		15.1
(3) 		10.6
(-3) 		11.2
(-2.2) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 6.5
(-1.7)
A 		10.2
(0.8)
A 		8.7
(-0.2)
A 		13.3
(3)
A 		8.4
(-0.4)
A 		4.7
(-3)
A 		9
B 27.9
(3)
A 		9.2
(-1.7)
A 		7.4
(-2.1)
A 		10
(-1.5)
A 		3.9
(-3)
A 		8.6
(-1.8)
A 		24
C 5.9
(-2.3)
A 		13.9
(3)
A 		7.1
(-1.5)
A 		11.5
(1.4)
A 		6.4
(-1.9)
A 		4.8
(-3)
A 		9
avr 13.4
(3) 		11.1
(1.1) 		7.7
(-1.6) 		11.6
(1.5) 		6.2
(-2.8) 		6
(-3) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 3.6
(2.7)
A 		3.7
(3)
A 		3.4
(2.1)
A 		1.6
(-3)
A 		2
B 4.9
(3)
A 		2.5
(-3)
A 		2.5
(-3)
A 		2.8
(-2.3)
A 		2
C 4.3
(1.4)
A 		5.3
(3)
A 		2.8
(-1.1)
A 		1.6
(-3)
A 		4
avr 4.3
(3) 		3.8
(1.7) 		2.9
(-0.7) 		2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.2
(-2.8)
A 		3.6
(3)
A 		1.9
(-1.1)
A 		3.4
(2.5)
A 		2.5
(0.4)
A 		1.1
(-3)
A 		3
B 9.7
(3)
A 		3.1
(-1.9)
A 		1.8
(-2.9)
A 		2.7
(-2.2)
A 		1.6
(-3)
A 		3.2
(-1.8)
A 		8
C 2.2
(-1.6)
A 		4.2
(3)
A 		1.8
(-2.5)
A 		2.3
(-1.4)
A 		2.1
(-1.8)
A 		1.6
(-3)
A 		3
avr 4.4
(3) 		3.6
(1.2) 		1.8
(-3) 		2.8
(-0.7) 		2.1
(-2.3) 		2
(-2.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175983_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4668
Sequence Type Exemplar sequence
Representative Public ID T05A8.7 NCBI
Target Description T05A8.7 /REP_DB=WormBase Gene ID /WP=CE25979 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061945(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061945 NCBI Caenorhabditis elegans T05A8.7 (T05A8.7) mRNA, complete cds. 11/11 None
T05A8.7 ENSEMBL cdna:known chromosome:CEL140:II:2740315:2742341:-1 gene:T05A8.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000032424 8/11 Cross Hyb Matching Probes None
GENEFINDER00000032426 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2740313-2742340(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl T05A8.7
Entrez Gene 188092 Entrez gene
SwissProt Q965K7 EMBL-EBI
WormBase CE25979 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_494346 T05A8.7 [Caenorhabditis elegans] gb|AAK84566.1| Hypothetical protein T05A8.7 [Caenorhabditis elegans] 0.0
blast A88082 protein T05A8.7 [imported] - Caenorhabditis elegans 0.0
blast CAE72409 Hypothetical protein CBG19570 [Caenorhabditis briggsae] 2.0E-35
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_494346.1 1 31-50
T05A8.7 1 31-50
Sequence
Target Sequence 
>C. ELEGANS:175983_AT
actcttgtgccgaggcttcatcgagttcaggaacggaaagagttcaccgagtgcatgatg
aactgctttgggaagggatggatgtcgtcgctgaaggcggtctacgcgttcagggataag
tatattgaggagaagcctaacacccacacttgcaagttctgcgggcaaaccgatgggaac
gtgaaggacgaccgccagctgaatatctcggcacaccatgcctgcttcaagaaccgggtc
tgcgacgtgctctggcaactccgttacgtcaaaaaaagcaccaacgccgccgtcgaggtc
catgttccgatgcccggcgaattcgagttctggaccaacgggatgttggacagactgctc
atcgagataaaccgctacttcccgcaacaggggcagctgagcaaaaccgagcagagagtg
aattgtattgtgatgttcgcgaggctccatctcagttttgttgagcagactacttgtgct
gcttccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACTCTTGTGCCGAGGCTTCATCGAG 657 99 670 Antisense
TGTCGTCGCTGAAGGCGGTCTACGC 562 557 752 Antisense
TAACACCCACACTTGCAAGTTCTGC 399 639 807 Antisense
GACCGCCAGCTGAATATCTCGGCAC 84 383 859 Antisense
ACCATGCCTGCTTCAAGAACCGGGT 256 87 884 Antisense
ATGCCCGGCGAATTCGAGTTCTGGA 624 41 979 Antisense
CATCGAGATAAACCGCTACTTCCCG 44 213 1029 Antisense
TACTTCCCGCAACAGGGGCAGCTGA 532 643 1045 Antisense
TGTATTGTGATGTTCGCGAGGCTCC 391 561 1093 Antisense
CGAGGCTCCATCTCAGTTTTGTTGA 496 249 1109 Antisense
AGCAGACTACTTGTGCTGCTTCCCA 454 75 1133 Antisense
Sequence Source Affymetrix Proprietary Database