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[175982_at]

Description EGAP5.1 /REP_DB=WormBase Gene ID /WP=CE04326 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 55      6grp_high1_10_10 > 55      4grp_highest_8_8 > 47      4grp_high_8_8 > 03      6grp_highest_nonorm > 81      6grp_total > 55      4grp_total > 13      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 545
1 2 3 4 range
A 391.5
(-0.1)
P 		161.3
(-2.7)
P 		134.7
(-3)
P 		658.9
(3)
P 		524
B 360.3
(-0.2)
P 		151.5
(-2.6)
P 		114.3
(-3)
P 		637.3
(3)
P 		523
C 352.3
(0.2)
P 		228
(-1.5)
P 		119.7
(-3)
P 		559.6
(3)
P 		440
avr 368
(-0) 		180.3
(-2.3) 		122.9
(-3) 		618.6
(3) 		496

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 177
1 2 3 4 5 6 range
A 258.4
(-0.1)
P 		184.7
(-3)
P 		335.4
(3)
P 		242.2
(-0.7)
P 		221.9
(-1.5)
P 		238.5
(-0.9)
P 		151
B 293.6
(0.3)
P 		315.7
(2)
P 		328.5
(3)
P 		250.4
(-3)
P 		276.2
(-1)
P 		301.8
(0.9)
P 		78
C 249.8
(-0)
P 		308.3
(2)
P 		195.3
(-1.9)
P 		273.8
(0.8)
P 		161.8
(-3)
P 		338.3
(3)
P 		177
avr 267.3
(0.9) 		269.6
(1.1) 		286.4
(2.5) 		255.5
(-0.1) 		220
(-3) 		292.9
(3) 		73
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 142.5
(3)
P 		35
(-3)
P 		35.2
(-3)
P 		96.5
(0.4)
P 		108
B 114.9
(1.9)
P 		37.4
(-2.4)
P 		26.5
(-3)
P 		135.8
(3)
P 		109
C 116.6
(3)
P 		65.5
(-1.1)
P 		41.7
(-3)
P 		94.4
(1.2)
P 		75
avr 124.7
(3) 		46
(-2.2) 		34.5
(-3) 		108.9
(1.9) 		90

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 47.6
(-3)
P 		65.7
(1.3)
P 		73
(3)
P 		61.4
(0.3)
P 		67
(1.6)
P 		58.1
(-0.5)
P 		25
B 102.2
(1.7)
P 		105.1
(2)
P 		79.8
(-1.2)
P 		66.3
(-3)
P 		112.2
(3)
P 		112.5
(3)
P 		46
C 92.6
(1.1)
P 		94.1
(1.2)
P 		49.7
(-3)
P 		55.1
(-2.5)
P 		52.4
(-2.7)
P 		113.2
(3)
P 		64
avr 80.8
(0.5) 		88.3
(1.9) 		67.5
(-1.8) 		60.9
(-3) 		77.2
(-0.1) 		94.6
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175982_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16389
Sequence Type Exemplar sequence
Representative Public ID EGAP5.1 NCBI
Target Description EGAP5.1 /REP_DB=WormBase Gene ID /WP=CE04326 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076475(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076475 NCBI Caenorhabditis elegans EGAP5.1 (EGAP5.1) mRNA, complete cds. 11/11 None
SNAP00000031455 ENSEMBL cdna:SNAP chromosome:CEL140:X:5163022:5163322:1 11/11 None
GENEFINDER00000031456 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:5163022:5163301:1 11/11 None
EGAP5.1 ENSEMBL cdna:known chromosome:CEL140:X:5163022:5163322:1 gene:EGAP5.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:5163022-5163323(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl EGAP5.1
Entrez Gene 180786 Entrez gene
SwissProt Q19078 EMBL-EBI
WormBase CE04326 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA83280 Hypothetical protein EGAP5.1 [Caenorhabditis elegans] ref|NP_508876.1| EGAP5.1 [Caenorhabditis elegans] 4.0E-40
blast AAA83280 Hypothetical protein EGAP5.1 [Caenorhabditis elegans] ref|NP_508876.1| EGAP5.1 [Caenorhabditis elegans] 1.0E-36
blast CAE68702 Hypothetical protein CBG14623 [Caenorhabditis briggsae] 4.0E-25
blast CAE68702 Hypothetical protein CBG14623 [Caenorhabditis briggsae] 5.0E-22
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_508876.1 1 5-23
EGAP5.1 1 5-23
SNAP00000031455 1 5-23
GENEFINDER00000031456 1 5-23
Sequence
Target Sequence 
>C. ELEGANS:175982_AT
tgtcgccaaacatgttcggacttgtgttcttcctcatcgtcgctgttgcacaagcatccc
tgttccttgatgagaatagcagagtgatggctcagccagagagtgttggatcctatgtta
ctgatctggataagctgaaaaggtcgtttggacgcaattgtatgctagccatctccggat
gcttcacctcgtcgcaggccgaacgatatag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCGCCAAACATGTTCGGACTTGT 229 555 14 Antisense
CATGTTCGGACTTGTGTTCTTCCTC 126 211 24 Antisense
TCATCGTCGCTGTTGCACAAGCATC 686 621 47 Antisense
CACAAGCATCCCTGTTCCTTGATGA 157 195 62 Antisense
ATCCCTGTTCCTTGATGAGAATAGC 579 37 69 Antisense
ATAGCAGAGTGATGGCTCAGCCAGA 585 21 89 Antisense
GGCTCAGCCAGAGAGTGTTGGATCC 252 539 102 Antisense
GAGTGTTGGATCCTATGTTACTGAT 366 401 114 Antisense
GAAAAGGTCGTTTGGACGCAATTGT 501 353 150 Antisense
CGCAATTGTATGCTAGCCATCTCCG 446 253 166 Antisense
CCTCGTCGCAGGCCGAACGATATAG 249 265 200 Antisense
Sequence Source Affymetrix Proprietary Database