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[175981_at]

Description ZK370.4 /REP_DB=WormBase Gene ID /WP=CE25687 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 85      6grp_high1_10_10 > 57      4grp_highest_8_8 > 47      4grp_high_8_8 > 03      6grp_highest_nonorm > 85      6grp_total > 58      4grp_total > 13      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1636
1 2 3 4 range
A 1557.9
(0.3)
P 		1059.9
(-1.7)
P 		741.5
(-3)
P 		2227.3
(3)
P 		1486
B 1676
(0.3)
P 		922.3
(-2.7)
P 		845.6
(-3)
P 		2377.9
(3)
P 		1532
C 1478.1
(0.2)
P 		805
(-3)
P 		899.5
(-2.6)
P 		2079.7
(3)
P 		1275
avr 1570.7
(0.2) 		929.1
(-2.6) 		828.9
(-3) 		2228.3
(3) 		1399

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1027
1 2 3 4 5 6 range
A 935.8
(-0)
P 		805.1
(-0.8)
P 		429.1
(-3)
P 		588.4
(-2.1)
P 		557.7
(-2.2)
P 		1455.6
(3)
P 		1027
B 981.7
(1.8)
P 		580.9
(-2.1)
P 		620.5
(-1.7)
P 		490.6
(-3)
P 		585.1
(-2.1)
P 		1110.4
(3)
P 		620
C 1007.1
(0.3)
P 		654
(-2.9)
P 		642.2
(-3)
P 		661.6
(-2.8)
P 		806.8
(-1.5)
P 		1296.1
(3)
P 		654
avr 974.9
(0.4) 		680
(-2) 		563.9
(-3) 		580.2
(-2.9) 		649.9
(-2.3) 		1287.4
(3) 		724
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 373
1 2 3 4 range
A 567.2
(3)
P 		230.1
(-2.4)
P 		193.8
(-3)
P 		326
(-0.9)
P 		373
B 534.5
(3)
P 		227.8
(-2.4)
P 		195.9
(-3)
P 		506.7
(2.5)
P 		339
C 489.3
(3)
P 		231.4
(-3)
P 		313.5
(-1.1)
P 		350.7
(-0.2)
P 		258
avr 530.3
(3) 		229.8
(-3) 		234.4
(-2.9) 		394.5
(0.3) 		301

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 340
1 2 3 4 5 6 range
A 172.5
(-1.2)
P 		286.3
(1.4)
P 		93.5
(-3)
P 		149.2
(-1.7)
P 		168.3
(-1.3)
P 		354.4
(3)
P 		261
B 341.6
(1.5)
P 		193.4
(-1.7)
P 		150.7
(-2.6)
P 		129.9
(-3)
P 		237.7
(-0.7)
P 		414
(3)
P 		284
C 373.3
(1.8)
P 		199.5
(-1.7)
P 		163.5
(-2.4)
P 		133
(-3)
P 		261.1
(-0.4)
P 		433.9
(3)
P 		301
avr 295.8
(0.6) 		226.4
(-1) 		135.9
(-3) 		137.4
(-3) 		222.4
(-1) 		400.8
(3) 		265
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175981_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6774
Sequence Type Exemplar sequence
Representative Public ID ZK370.4 NCBI
Target Description ZK370.4 /REP_DB=WormBase Gene ID /WP=CE25687 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066526(11), NM_066525(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066526 NCBI Caenorhabditis elegans ZK370.4b (ZK370.4) mRNA, complete cds. 11/11 None
NM_066525 NCBI Caenorhabditis elegans ZK370.4a (ZK370.4) mRNA, complete cds. 11/11 None
GENEFINDER00000004305 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8725428:8736304:-1 11/11 None
SNAP00000004294 ENSEMBL cdna:SNAP chromosome:CEL140:III:8725495:8731275:-1 11/11 None
ZK370.4b ENSEMBL cdna:known chromosome:CEL140:III:8725234:8731275:-1 gene:ZK370.4 11/11 None
ZK370.4a ENSEMBL cdna:known chromosome:CEL140:III:8725495:8731275:-1 gene:ZK370.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8725490-8731271(-) 100.0 100.0
Public Domain and Genome References
Ensembl ZK370.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP68923 Hypothetical protein ZK370.4b [Caenorhabditis elegans] ref|NP_498927.2| ZK370.4b [Caenorhabditis elegans] sp|Q02331|YOL4_CAEEL Hypothetical UPF0028 protein ZK370.4 in chromosome III 0.0
blast AAP68922 Hypothetical protein ZK370.4a [Caenorhabditis elegans] ref|NP_498926.2| ZK370.4a [Caenorhabditis elegans] 0.0
blast S44665 ZK370.4 protein - Caenorhabditis elegans 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002641 EMBL-EBI Patatin 3.7E-65
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.6E-16
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.4E-20
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.2E-22
Pfam IPR002641 EMBL-EBI Patatin 3.7E-65
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 8.9E-18
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.2E-22
Pfam IPR002641 EMBL-EBI Patatin 3.7E-65
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.6E-16
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 8.9E-18
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.2E-22
Pfam IPR002641 EMBL-EBI Patatin 3.7E-65
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 2.6E-16
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 8.9E-18
Pfam IPR000595 EMBL-EBI Cyclic nucleotide-binding domain 1.2E-22
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_498927.2 3 2-19,23-45,302-324
NP_498926.2 3 2-19,23-45,302-324
ZK370.4b 3 2-19,23-45,302-324
ZK370.4a 3 2-19,23-45,302-324
GENEFINDER00000004305 3 40-62,66-88,345-367
SNAP00000004294 3 2-19,23-45,320-342
Sequence
Target Sequence 
>C. ELEGANS:175981_AT
caaagtcgtctcgcatatgtttcatgtgttcgtcagttggaagttgtgaagaaggcatcg
tactgtcgctacttgagaccaccgattgaacccttcaagacgctcgattttccaaagttc
caggaaattatggaactcggcttgaaatatggacgtgaagcatgtcatgaactgattaca
aacgatcgtgctggaattctgggtgacgagaaagagacaagaaagttcaagagacaacag
agccgtcgtgagaagcccgatgtttcccgagcggtttcattcactgatcttgccgcagcg
atgtcaaagatcccggttgttcgacccactcttcgtcattctatgagcttgaatccatca
gctaatggaccagttggaagagccggcgatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAGTCGTCTCGCATATGTTTCAT 139 193 3514 Antisense
AAGAAGGCATCGTACTGTCGCTACT 564 151 3562 Antisense
GCTACTTGAGACCACCGATTGAACC 114 301 3581 Antisense
ATTGAACCCTTCAAGACGCTCGATT 137 5 3598 Antisense
ACGCTCGATTTTCCAAAGTTCCAGG 331 91 3613 Antisense
ACAGAGCCGTCGTGAGAAGCCCGAT 609 105 3750 Antisense
GATGTTTCCCGAGCGGTTTCATTCA 212 399 3772 Antisense
CACTGATCTTGCCGCAGCGATGTCA 35 199 3795 Antisense
TCAAAGATCCCGGTTGTTCGACCCA 659 627 3817 Antisense
CCCACTCTTCGTCATTCTATGAGCT 240 259 3838 Antisense
GGACCAGTTGGAAGAGCCGGCGATC 524 521 3880 Antisense
Sequence Source Affymetrix Proprietary Database