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[175978_s_at]

Description Y41D4A.G /REP_DB=WormBase Gene ID /WP=CE21849 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 91      4grp_total > 44      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 116
1 2 3 4 range
A 81
(-0.9)
A 		117.1
(3)
A 		73.7
(-1.7)
A 		61.9
(-3)
A 		55
B 151.2
(3)
A 		93
(-0)
A 		85.2
(-0.4)
A 		35.2
(-3)
A 		116
C 83.7
(0.9)
M 		106.6
(3)
A 		41.6
(-3)
A 		50.1
(-2.2)
A 		65
avr 105.3
(3) 		105.6
(3) 		66.8
(-1.1) 		49.1
(-3) 		57

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 86
1 2 3 4 5 6 range
A 8
(-3)
A 		45.1
(-0.3)
A 		11.2
(-2.8)
A 		90.9
(3)
A 		46.7
(-0.2)
A 		56.7
(0.5)
A 		83
B 79.1
(1.5)
A 		75.8
(1.2)
A 		60.1
(-0.4)
A 		63.9
(0)
P 		93.5
(3)
A 		34.3
(-3)
A 		59
C 50.3
(-0.1)
A 		61.9
(0.9)
A 		36.9
(-1.2)
A 		85.6
(2.8)
A 		88.1
(3)
A 		14.8
(-3)
A 		73
avr 45.8
(-1.6) 		60.9
(0.4) 		36.1
(-2.9) 		80.1
(3) 		76.1
(2.5) 		35.3
(-3) 		45
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 29.5
(3)
A 		25.4
(1.8)
A 		19.3
(0)
A 		9.1
(-3)
A 		20
B 48.2
(3)
A 		23
(-0.7)
A 		19.7
(-1.2)
A 		7.5
(-3)
A 		41
C 27.7
(2.2)
M 		30.6
(3)
A 		14.5
(-1.4)
A 		8.4
(-3)
A 		22
avr 35.1
(3) 		26.3
(1) 		17.8
(-0.9) 		8.3
(-3) 		27

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 1.5
(-3)
A 		16.1
(1.1)
A 		2.4
(-2.8)
A 		23.1
(3)
A 		14.1
(0.5)
A 		13.8
(0.4)
A 		22
B 27.5
(0.5)
A 		25.2
(-0)
A 		14.6
(-2.6)
A 		16.9
(-2)
P 		38
(3)
A 		12.8
(-3)
A 		25
C 18.7
(0.5)
A 		18.9
(0.6)
A 		9.4
(-1.9)
A 		17.2
(0.1)
A 		28.5
(3)
A 		4.9
(-3)
A 		24
avr 15.9
(-0.6) 		20.1
(0.7) 		8.8
(-3) 		19.1
(0.4) 		26.9
(3) 		10.5
(-2.4) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175978_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19320
Sequence Type Exemplar sequence
Representative Public ID Y41D4A.G NCBI
Target Description Y41D4A.G /REP_DB=WormBase Gene ID /WP=CE21849 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067733(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067733 NCBI Caenorhabditis elegans Y41D4A.1 (Y41D4A.1) mRNA, complete cds. 10/11 A 
Y41D4A.1 ENSEMBL cdna:known chromosome:CEL140:IV:1772142:1774693:1 gene:Y41D4A.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000028260 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:1768624-1773777(+) 81.79 100.0
Public Domain and Genome References
Gene Title
Ensembl Y41D4A.1
Entrez Gene 176986 Entrez gene
WormBase CE39046 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68451 Hypothetical protein Y41D4A.1 [Caenorhabditis elegans] ref|NP_500134.1| Y41D4A.1 [Caenorhabditis elegans] 1.0E-155
blast CAE63842 Hypothetical protein CBG08398 [Caenorhabditis briggsae] 1.0E-103
blast CAB05152 Hypothetical protein C43F9.5 [Caenorhabditis elegans] ref|NP_501957.1| C43F9.5 [Caenorhabditis elegans] 1.0E-55
Sequence
Target Sequence 
>C. ELEGANS:175978_S_AT
tttgtcttacccatagtattcgccgggcttggctcctactgactaccatctgttccgctc
actccagaatcactttgccgggcagaagtttcatgatcgaaaggtcgtcgaaacgggcct
gcccatcatcacaatcgtgtccgaatggcgggatattcatgaacatcgcttgcgagcaat
cttatcaatgtaccccttattattcgggagtctccacgtgtattaacaatttttgctgta
cgtcacctaattctcagaatgtcccgaatccgattataacaacaacaactacgagagctc
caggttttggtgagtacagctctttttataattccataaaactaggttatccaacaggaa
tctgcccatcaggccagctatccgaagtacggtgtactacacgtggacaatgcgcggccg
gtcaaacatgtatcagtgggctttgttgtacgacgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTTGTCTTACCCATAGTATTCGCCG 112 667 1106 Antisense
CCCATCATCACAATCGTGTCCGAAT 259 259 1227 Antisense
GCGAGCAATCTTATCAATGTACCCC 51 291 1277 Antisense
GGGAGTCTCCACGTGTATTAACAAT 4 497 1311 Antisense
TTTTTGCTGTACGTCACCTAATTCT 344 673 1335 Antisense
TCTCAGAATGTCCCGAATCCGATTA 447 609 1357 Antisense
AGTACAGCTCTTTTTATAATTCCAT 85 61 1418 Antisense
TCCAACAGGAATCTGCCCATCAGGC 115 587 1455 Antisense
TCAGGCCAGCTATCCGAAGTACGGT 507 239 1474 Antisense
GCGGCCGGTCAAACATGTATCAGTG 7 293 1519 Antisense
TCAGTGGGCTTTGTTGTACGACGAC 627 613 1538 Antisense
Sequence Source Affymetrix Proprietary Database