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[175976_at] 7TM chemoreceptor, srt family

Description Y55F3C.G /REP_DB=WormBase Gene ID /WP=CE22565 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 23      4grp_total > 11      6grp_cgc > 30      6grp_cgc_sub > De      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 79
1 2 3 4 range
A 45.5
(-2.3)
A 		48.6
(-2)
A 		36.4
(-3)
A 		109.5
(3)
P 		73
B 48.4
(-1.2)
A 		49.8
(-1.1)
A 		30.7
(-3)
A 		90.4
(3)
M 		60
C 58.4
(-0.8)
M 		56.5
(-1)
A 		32
(-3)
P 		105.6
(3)
P 		74
avr 50.8
(-1.4) 		51.6
(-1.4) 		33
(-3) 		101.8
(3) 		69

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 59
1 2 3 4 5 6 range
A 69.7
(3)
A 		22.5
(-3)
A 		55.4
(1.2)
A 		32.8
(-1.7)
A 		35.2
(-1.4)
A 		45.7
(-0.1)
A 		47
B 59.6
(0.7)
A 		79.2
(3)
A 		63.2
(1.1)
M 		42
(-1.4)
A 		49
(-0.6)
P 		28.5
(-3)
A 		51
C 37.6
(-1.8)
A 		80.1
(2.9)
M 		42.1
(-1.3)
A 		81
(3)
P 		27.1
(-3)
A 		58.5
(0.5)
P 		54
avr 55.6
(1.7) 		60.6
(3) 		53.6
(1.2) 		51.9
(0.8) 		37.1
(-3) 		44.2
(-1.2) 		24
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 16.6
(3)
A 		10.5
(-2.2)
A 		9.5
(-3)
A 		16
(2.5)
P 		7
B 15.4
(1.1)
A 		12.3
(-0.4)
A 		7.1
(-3)
A 		19.3
(3)
M 		12
C 19.3
(3)
M 		16.2
(0.7)
A 		11.2
(-3)
P 		17.8
(1.9)
P 		8
avr 17.1
(2.6) 		13
(-0.4) 		9.3
(-3) 		17.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 12.8
(3)
A 		8
(-3)
A 		12.1
(2.1)
A 		8.3
(-2.6)
A 		10.6
(0.2)
A 		11.1
(0.9)
A 		5
B 20.7
(0.9)
A 		26.3
(3)
A 		15.3
(-1.2)
M 		11.1
(-2.8)
A 		19.9
(0.6)
P 		10.6
(-3)
A 		16
C 13.9
(-1)
A 		24.4
(3)
M 		10.7
(-2.3)
A 		16.3
(-0.1)
P 		8.8
(-3)
A 		19.6
(1.2)
P 		16
avr 15.8
(0) 		19.6
(3) 		12.7
(-2.4) 		11.9
(-3) 		13.1
(-2.1) 		13.8
(-1.5) 		8
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175976_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19165
Sequence Type Exemplar sequence
Representative Public ID Y55F3C.G NCBI
Target Description Y55F3C.G /REP_DB=WormBase Gene ID /WP=CE22565 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067578(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067578 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-23) (srt-23) mRNA, complete cds. 11/11 None
GENEFINDER00000015020 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:756721:759120:1 11/11 None
Y55F3C.2 ENSEMBL cdna:known chromosome:CEL140:IV:756721:759084:1 gene:Y55F3C.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015010 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:756726-758653(+) 100.0 100.0
Public Domain and Genome References
Gene Title 7TM chemoreceptor, srt family
Gene Symbol srt-23
Ensembl Y55F3C.2
Entrez Gene 190321 Entrez gene
SwissProt Q5KQP7 EMBL-EBI
WormBase CE38007 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6118 electron transport inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5489 electron transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAW57824 Serpentine receptor, class t protein 23 [Caenorhabditis elegans] ref|NP_499979.2| Serpentine Receptor, class T family member (srt-23) [Caenorhabditis elegans] 0.0
blast AAY86308 Hypothetical protein Y55F3C.10 [Caenorhabditis elegans] 0.0
blast AAK72079 Serpentine receptor, class t protein 24 [Caenorhabditis elegans] ref|NP_499976.2| Serpentine Receptor, class T family member (srt-24) [Caenorhabditis elegans] 1.0E-143
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.7E-115
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_499979.2 7 44-66,79-101,116-138,159-181,206-228,249-268,278-300
Y55F3C.2 7 44-66,79-101,116-138,159-181,206-228,249-268,278-300
GENEFINDER00000015020 7 44-66,79-101,116-138,159-181,206-228,249-268,278-300
Sequence
Target Sequence 
>C. ELEGANS:175976_AT
ggctctcttggatgtggatgctggatgggatcctgtgctacctgtatccttcttggaatc
aatcgatgttgtgatgttaatcaacatctccgaatccgcaccatattcatcggccggaaa
atcttcctcactatagctgtccccattctttttacaatttactcgatatttttcaccaaa
cccgttatatttaattcaaactatatgagctggttctttaatccaatgctccctggtcac
gaggcgaccgactacataaacatcgcacataccatcaacaactgtgttgtttccctggca
actacagcaatatactcgtatctatgcattctattgttcgccaagagcaaacatttccgt
tcagagtcgatttcaagaactcagactcagatcttcttccaatccgtcctgatctgctct
ttcaatgcaatcgctgcctacatctatgtctacatgcaattcttctattctcccccagcc
gttgtgcttgttggacag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGCTCTCTTGGATGTGGATGCTGGA 263 539 367 Antisense
TGCTACCTGTATCCTTCTTGGAATC 607 579 402 Antisense
GAAAATCTTCCTCACTATAGCTGTC 418 353 483 Antisense
TACTCGATATTTTTCACCAAACCCG 318 645 526 Antisense
GCTGGTTCTTTAATCCAATGCTCCC 123 295 575 Antisense
CGAGGCGACCGACTACATAAACATC 629 247 606 Antisense
ACATCGCACATACCATCAACAACTG 8 107 626 Antisense
GTGTTGTTTCCCTGGCAACTACAGC 94 485 650 Antisense
ATCTATGCATTCTATTGTTCGCCAA 658 29 686 Antisense
AACATTTCCGTTCAGAGTCGATTTC 614 135 716 Antisense
CCCAGCCGTTGTGCTTGTTGGACAG 280 257 840 Antisense
Sequence Source Affymetrix Proprietary Database