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[175975_at]

Description M02H5.3 /REP_DB=WormBase Gene ID /WP=CE25952 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 16      4grp_highest_8_8 > 30      4grp_high_8_8 > 04      6grp_total > 06      4grp_total > 04      6grp_cgc > 22      6grp_high1_sub > De      6grp_cgc_sub > De      6grp_total_sub > Decrease      6grp_rule_based > S1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 174
1 2 3 4 range
A 201.7
(-2.1)
P 		232.6
(-0.3)
P 		186.3
(-3)
P 		288
(3)
P 		102
B 247.2
(-1.8)
P 		224.8
(-3)
P 		238.5
(-2.3)
P 		336.1
(3)
P 		111
C 262.1
(0.8)
P 		162.4
(-3)
P 		204.2
(-1.4)
P 		321.3
(3)
P 		159
avr 237
(-1.3) 		206.6
(-3) 		209.7
(-2.8) 		315.1
(3) 		109

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 204
1 2 3 4 5 6 range
A 205.1
(3)
P 		139.1
(0.1)
P 		125.5
(-0.4)
P 		103.4
(-1.4)
P 		77.9
(-2.5)
P 		66.5
(-3)
A 		139
B 267.3
(3)
P 		195.7
(0.9)
P 		151.4
(-0.4)
P 		105.2
(-1.8)
P 		107.1
(-1.7)
P 		63.1
(-3)
P 		204
C 210.7
(3)
P 		162.6
(0.7)
P 		105.5
(-2)
P 		84.2
(-3)
P 		90.2
(-2.7)
M 		112.4
(-1.7)
P 		127
avr 227.7
(3) 		165.8
(0.5) 		127.5
(-1.1) 		97.6
(-2.3) 		91.7
(-2.6) 		80.7
(-3) 		147
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 73.4
(3)
P 		50.5
(-1.4)
P 		48.7
(-1.8)
P 		42.2
(-3)
P 		31
B 78.8
(3)
P 		55.5
(-2.9)
P 		55.3
(-3)
P 		71.6
(1.2)
P 		24
C 86.8
(3)
P 		46.7
(-3)
P 		71.2
(0.7)
P 		54.2
(-1.9)
P 		40
avr 79.7
(3) 		50.9
(-3) 		58.4
(-1.4) 		56
(-1.9) 		29

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 37.8
(0.9)
P 		49.5
(3)
P 		27.3
(-1)
P 		26.2
(-1.2)
P 		23.5
(-1.7)
P 		16.2
(-3)
A 		33
B 93
(3)
P 		65.1
(0.6)
P 		36.8
(-1.9)
P 		27.9
(-2.6)
P 		43.5
(-1.3)
P 		23.5
(-3)
P 		70
C 78.1
(3)
P 		49.6
(0.2)
P 		26.9
(-2)
P 		16.9
(-3)
P 		29.2
(-1.8)
M 		37.6
(-1)
P 		61
avr 69.6
(3) 		54.7
(1.1) 		30.3
(-2.1) 		23.7
(-3) 		32.1
(-1.9) 		25.8
(-2.7) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175975_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15373
Sequence Type Exemplar sequence
Representative Public ID M02H5.3 NCBI
Target Description M02H5.3 /REP_DB=WormBase Gene ID /WP=CE25952 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070810(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070810 NCBI Caenorhabditis elegans M02H5.3 (M02H5.3) mRNA, complete cds. 11/11 None
SNAP00000034172 ENSEMBL cdna:SNAP chromosome:CEL140:V:465987:467201:1 11/11 None
GENEFINDER00000034178 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:465586:467201:1 11/11 None
M02H5.3 ENSEMBL cdna:known chromosome:CEL140:V:465488:467201:1 gene:M02H5.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:465487-467201(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-201
Ensembl M02H5.3
Entrez Gene 187408 Entrez gene
SwissProt Q966H7 EMBL-EBI
WormBase CE25952 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503211 M02H5.3 [Caenorhabditis elegans] gb|AAK84553.1| Hypothetical protein M02H5.3 [Caenorhabditis elegans] 0.0
blast NP_503210 M02H5.4 [Caenorhabditis elegans] gb|AAK84554.1| Hypothetical protein M02H5.4 [Caenorhabditis elegans] 1.0E-154
blast NP_503209 M02H5.5 [Caenorhabditis elegans] gb|AAK84555.1| Hypothetical protein M02H5.5 [Caenorhabditis elegans] 1.0E-139
Protein Domains
Database ID Description E-Value
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0015
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.4E-17
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0015
Pfam IPR000536 EMBL-EBI Ligand-binding domain of nuclear hormone receptor 0.0015
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 1.4E-17
Sequence
Target Sequence 
>C. ELEGANS:175975_AT
cttcccagtcaattgcagctggacattgtaaaaaaagaatggcttgtttggagtggattg
gagaagcttgcagcactgggaaaaactagaagacaaatgatgtatgaagactttgcattt
gtacttcacgtggacaatgaattagtggcgtttaagaagacgattgaagttgatatatca
tggtgttcgaattataaacttgagcaattggatttcttcgactgcaacttcaaagaacgt
cacgaacaactagttcagcagattgtagccctcaacccaaccgacgaggaattgagcttt
atgctatgctatttaagctttcaacattatatgaaacattgtccgaagcacaatgtggaa
atagtagaacaacttcaagactccatatcaaatcatctacacgaatattatttgaaccat
atgagccgtccgaattattcggggagaattgccgctattatgaagctcattaatgctata
cagctatttttgctacatgataaaaccaagatggagctgatgaaagtgttcaaagtgtgt
ttcgctaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCCCAGTCAATTGCAGCTGGACA 3 221 724 Antisense
TGGAGAAGCTTGCAGCACTGGGAAA 12 547 782 Antisense
GACTTTGCATTTGTACTTCACGTGG 672 371 832 Antisense
GATTTCTTCGACTGCAACTTCAAAG 371 427 934 Antisense
GTTCAGCAGATTGTAGCCCTCAACC 334 443 976 Antisense
CAACCCAACCGACGAGGAATTGAGC 212 179 996 Antisense
ACAACTTCAAGACTCCATATCAAAT 353 113 1092 Antisense
TGAACCATATGAGCCGTCCGAATTA 226 573 1136 Antisense
GAATTGCCGCTATTATGAAGCTCAT 257 323 1169 Antisense
GCTATACAGCTATTTTTGCTACATG 23 305 1198 Antisense
AAGTGTTCAAAGTGTGTTTCGCTAA 118 159 1247 Antisense
Sequence Source Affymetrix Proprietary Database