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[175973_at]

Description M02H5.7 /REP_DB=WormBase Gene ID /WP=CE25955 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 41      4grp_total > 31      6grp_cgc > 71      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 88
1 2 3 4 range
A 104.9
(3)
P 		17.2
(-3)
A 		20.9
(-2.7)
A 		55.6
(-0.4)
P 		88
B 68.8
(3)
A 		25.2
(-3)
A 		44.4
(-0.4)
A 		41.9
(-0.7)
A 		44
C 82.3
(3)
P 		26.1
(-3)
A 		39
(-1.6)
A 		67.1
(1.4)
A 		56
avr 85.3
(3) 		22.8
(-3) 		34.8
(-1.8) 		54.9
(0.1) 		63

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 103
1 2 3 4 5 6 range
A 96.4
(2.6)
M 		82.1
(0.4)
P 		99.2
(3)
P 		67.9
(-1.8)
P 		68.3
(-1.7)
P 		59.9
(-3)
A 		39
B 64.4
(-0.9)
P 		76
(0.4)
M 		98.7
(3)
P 		48.9
(-2.7)
P 		74.9
(0.3)
P 		46.3
(-3)
A 		52
C 66.3
(0)
P 		67.9
(0.1)
P 		68.9
(0.2)
A 		117.7
(3)
P 		14.8
(-3)
A 		27.2
(-2.3)
A 		103
avr 75.7
(1.2) 		75.3
(1.2) 		88.9
(3) 		78.2
(1.6) 		52.7
(-1.9) 		44.5
(-3) 		44
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 35
1 2 3 4 range
A 38.2
(3)
P 		3.7
(-3)
A 		5.5
(-2.7)
A 		8.1
(-2.2)
P 		35
B 22
(3)
A 		6.2
(-3)
A 		10.3
(-1.4)
A 		8.9
(-2)
A 		16
C 27.2
(3)
P 		7.5
(-3)
A 		13.6
(-1.1)
A 		11.3
(-1.8)
A 		20
avr 29.1
(3) 		5.8
(-3) 		9.8
(-2) 		9.4
(-2.1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 26
1 2 3 4 5 6 range
A 17.8
(-1.7)
M 		29.2
(3)
P 		21.6
(-0.1)
P 		17.2
(-1.9)
P 		20.6
(-0.5)
P 		14.6
(-3)
A 		15
B 22.4
(0.2)
P 		25.3
(1.2)
M 		24
(0.8)
P 		13
(-3)
P 		30.4
(3)
P 		17.3
(-1.5)
A 		17
C 24.6
(3)
P 		20.7
(1.8)
P 		17.5
(0.8)
A 		23.7
(2.7)
P 		4.8
(-3)
A 		9.1
(-1.7)
A 		20
avr 21.6
(1.2) 		25.1
(3) 		21
(0.8) 		18
(-0.7) 		18.6
(-0.4) 		13.7
(-3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175973_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14920
Sequence Type Exemplar sequence
Representative Public ID M02H5.7 NCBI
Target Description M02H5.7 /REP_DB=WormBase Gene ID /WP=CE25955 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070806(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070806 NCBI Caenorhabditis elegans Nuclear Hormone Receptor family member (nhr-123) (nhr-123) mRNA, complete cds. 10/11 None
SNAP00000034166 ENSEMBL cdna:SNAP chromosome:CEL140:V:451282:453478:1 10/11 None
GENEFINDER00000034181 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:451282:453478:1 10/11 None
M02H5.7 ENSEMBL cdna:known chromosome:CEL140:V:451280:453584:1 gene:M02H5.7 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:451281-453478(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol nhr-123
Ensembl M02H5.7
Entrez Gene 187411 Entrez gene
SwissProt Q966I1 EMBL-EBI
WormBase CE21074 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6355 regulation of transcription, DNA-dependent inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5634 nucleus inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
3700 transcription factor activity inferred from electronic annotation QuickGO AmiGO
3707 steroid hormone receptor activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAR11989 nuclear receptor NHR-123 [Caenorhabditis elegans] ref|NP_503207.2| Nuclear Hormone Receptor family member (nhr-123) [Caenorhabditis elegans] gb|AAK84557.2| Nuclear hormone receptor family protein 123 [Caenorhabditis elegans] 0.0
blast NP_503208 Nuclear Hormone Receptor family member (nhr-98) [Caenorhabditis elegans] gb|AAK84556.2| Nuclear hormone receptor family protein 98 [Caenorhabditis elegans] sp|Q966I0|NHR98_CAEEL Nuclear hormone receptor family member nhr-98 0.0
blast CAE58254 Hypothetical protein CBG01355 [Caenorhabditis briggsae] 1.0E-135
blast AAR11989 nuclear receptor NHR-123 [Caenorhabditis elegans] ref|NP_503207.2| Nuclear Hormone Receptor family member (nhr-123) [Caenorhabditis elegans] gb|AAK84557.2| Nuclear hormone receptor family protein 123 [Caenorhabditis elegans] 1.0E-108
Protein Domains
Database ID Description E-Value
Pfam IPR001628 EMBL-EBI Zn-finger, C4-type steroid receptor 3.4E-11
Sequence
Target Sequence 
>C. ELEGANS:175973_AT
gttcaggtacacttttcattgcttcaaaatttgagagttttgaagaaaattgaaattttg
aagggagtgtggtctcttttcagtcgactggaaaacctcgcaacaactgcgagagcccga
aaacggaaattgtgcaaagatgacctggtcatgtcatatatgaataaaaacttggtgatt
tctgatttgaaaaccatcgaggtggatttatcttggtgctcaaagtacacgtatgagcag
ttgaaatttttcgaccaatatgatggcgtcagacagttggattctttaatcaaagcaatg
ctagatctccaaccaaccaacgaagaactttgctacatgatttgccaattatgcttccat
caagttggcaaacagttacatggacccattctagaaactatcgaaaaattacaagaagtt
ctgtctaatcacctacacgattattatgtgaatcacttgatccagccaaaatattctatg
agaattgcaagtatgatgaagattaacaatacagtagaccaatgcccataccgggatcgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTTCAGGTACACTTTTCATTGCTTC 581 443 724 Antisense
AAGGGAGTGTGGTCTCTTTTCAGTC 506 159 784 Antisense
CAGTCGACTGGAAAACCTCGCAACA 398 193 804 Antisense
GCAACAACTGCGAGAGCCCGAAAAC 412 317 823 Antisense
GATGGCGTCAGACAGTTGGATTCTT 115 407 985 Antisense
AAAGCAATGCTAGATCTCCAACCAA 585 123 1015 Antisense
GATTTGCCAATTATGCTTCCATCAA 620 427 1062 Antisense
GGCAAACAGTTACATGGACCCATTC 436 535 1090 Antisense
GAAGTTCTGTCTAATCACCTACACG 397 337 1138 Antisense
ATGTGAATCACTTGATCCAGCCAAA 702 49 1169 Antisense
AGACCAATGCCCATACCGGGATCGT 177 69 1239 Antisense
Sequence Source Affymetrix Proprietary Database