[Home] | [Total List]

[175971_at]

Description Y50D4C.A /REP_DB=WormBase Gene ID /WP=CE26543 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_high1_10_10 > 0      4grp_high_8_8 > 29      6grp_total > 09      4grp_total > 26      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 113
(-3)
P 		157
(3)
P 		120.1
(-2)
P 		126.8
(-1.1)
A 		44
B 101.3
(-3)
P 		142
(3)
P 		116.4
(-0.8)
P 		128.3
(1)
P 		41
C 107.7
(-1.8)
P 		117.3
(-1.2)
A 		88.6
(-3)
P 		186.6
(3)
P 		98
avr 107.3
(-3) 		138.8
(1.7) 		108.4
(-2.8) 		147.2
(3) 		40

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 83.9
(0.5)
P 		62.4
(-3)
M 		94.9
(2.3)
A 		84.3
(0.6)
P 		99
(3)
P 		97.1
(2.7)
P 		37
B 106.3
(1.5)
P 		67.9
(-3)
P 		94.7
(0.2)
P 		118.9
(3)
P 		79.6
(-1.6)
P 		84.9
(-1)
P 		51
C 106.7
(3)
P 		79
(-0.2)
P 		72.6
(-0.9)
A 		83.7
(0.3)
M 		83.1
(0.3)
P 		54.9
(-3)
P 		52
avr 99
(3) 		69.8
(-3) 		87.4
(0.6) 		95.6
(2.3) 		87.2
(0.6) 		79
(-1.1) 		29
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 41.1
(3)
P 		34.1
(1.1)
P 		31.4
(0.4)
P 		18.6
(-3)
A 		23
B 32.3
(0.9)
P 		35.1
(3)
P 		27
(-3)
P 		27.3
(-2.8)
P 		8
C 35.6
(3)
P 		33.7
(0.6)
A 		30.9
(-3)
P 		31.5
(-2.2)
P 		5
avr 36.3
(3) 		34.3
(1.9) 		29.8
(-0.7) 		25.8
(-3) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 15.5
(-3)
P 		22.2
(-0.2)
M 		20.7
(-0.8)
A 		21.4
(-0.5)
P 		29.9
(3)
P 		23.7
(0.4)
P 		14
B 37
(3)
P 		22.6
(-3)
P 		23
(-2.8)
P 		31.5
(0.7)
P 		32.3
(1)
P 		31.7
(0.8)
P 		14
C 39.5
(3)
P 		24.1
(-1.1)
P 		18.5
(-2.6)
A 		16.8
(-3)
M 		26.9
(-0.3)
P 		18.4
(-2.6)
P 		23
avr 30.7
(3) 		23
(-1.6) 		20.7
(-3) 		23.2
(-1.5) 		29.7
(2.4) 		24.6
(-0.7) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175971_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19512
Sequence Type Exemplar sequence
Representative Public ID Y50D4C.A NCBI
Target Description Y50D4C.A /REP_DB=WormBase Gene ID /WP=CE26543 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070960(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070960 NCBI Caenorhabditis elegans Y50D4C.5 (Y50D4C.5) mRNA, complete cds. 11/11 A 
Y50D4C.5 ENSEMBL cdna:known chromosome:CEL140:V:998276:1003422:-1 gene:Y50D4C.5 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000044743 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:1001263-1003422(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y50D4C.5
Entrez Gene 190100 Entrez gene
WormBase CE39053 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK68510 Hypothetical protein Y50D4C.5 [Caenorhabditis elegans] ref|NP_503361.1| Y50D4C.5 [Caenorhabditis elegans] 0.0
blast CAE71044 Hypothetical protein CBG17886 [Caenorhabditis briggsae] 9.0E-88
Sequence
Target Sequence 
>C. ELEGANS:175971_AT
gtgcgagaatgtctgctccaaacctgaagattggagaagcctcaacatcccagcctcagc
tcccgaaaatttcgagcccggtaaagaagaagatcactgtgagcacagcggcggttaaca
tgaaaatgcagcccgaagatcgcatgaaaatgttccaaaaaatgggccgagagcagtctc
taaaagtgagcactctacagcgaatgcaacgagaacgccaacgtgacttttccctagtcc
ccggtccaggccgtgcaagcctcgagactaatgggcctgtgccagccgattcaaatcaat
cgattgacacaggctcagaagagtggcccgagcttcacgagcacaccgaggttgaatcat
ggggggacatcggcagcagcggcgtcgtctccgacgatttccaacgtcagaagcatctcg
gaagcctcgttttgtatgatgtcgtcgggctcttcaatgccttcgtcgagcagca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTGCGAGAATGTCTGCTCCAAACCT 251 479 335 Antisense
ATTGGAGAAGCCTCAACATCCCAGC 156 3 364 Antisense
AGCCTCAGCTCCCGAAAATTTCGAG 69 85 386 Antisense
GTGAGCACAGCGGCGGTTAACATGA 57 483 433 Antisense
GTGAGCACTCTACAGCGAATGCAAC 320 481 520 Antisense
CGAGACTAATGGGCCTGTGCCAGCC 102 251 597 Antisense
GCTTCACGAGCACACCGAGGTTGAA 350 305 666 Antisense
TCGTCTCCGACGATTTCCAACGTCA 106 605 719 Antisense
GCATCTCGGAAGCCTCGTTTTGTAT 499 307 747 Antisense
TTTGTATGATGTCGTCGGGCTCTTC 505 665 765 Antisense
TCTTCAATGCCTTCGTCGAGCAGCA 234 617 785 Antisense
Sequence Source Affymetrix Proprietary Database