[Home] | [Total List]

[175969_at]

Description F41G4.7 /REP_DB=WormBase Gene ID /WP=CE04552 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 18      4grp_total > 47      6grp_total_sub > Decrease      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 83
1 2 3 4 range
A 90.1
(3)
A 		7.5
(-3)
A 		11.9
(-2.7)
A 		28.5
(-1.5)
A 		83
B 88.6
(3)
A 		11.7
(-3)
A 		11.2
(-3)
A 		19.1
(-2.4)
A 		77
C 19.7
(3)
A 		15.5
(0.9)
A 		15.4
(0.8)
A 		7.9
(-3)
A 		12
avr 66.1
(3) 		11.6
(-3) 		12.8
(-2.9) 		18.5
(-2.2) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 141.5
(3)
A 		29
(-2.2)
A 		17.5
(-2.7)
A 		16.7
(-2.8)
A 		24.5
(-2.4)
A 		11.6
(-3)
A 		130
B 19.5
(-1)
A 		45.6
(3)
A 		10.3
(-2.4)
A 		6.9
(-2.9)
A 		6.4
(-3)
A 		6.6
(-3)
A 		39
C 90.6
(3)
M 		25.3
(-1.6)
A 		12.1
(-2.5)
A 		17.8
(-2.1)
A 		64.6
(1.2)
A 		5.3
(-3)
A 		85
avr 83.9
(3) 		33.3
(-1) 		13.3
(-2.6) 		13.8
(-2.5) 		31.8
(-1.1) 		7.8
(-3) 		76
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 32.8
(3)
A 		1.6
(-3)
A 		3.1
(-2.7)
A 		4.2
(-2.5)
A 		31
B 28.2
(3)
A 		2.9
(-2.9)
A 		2.6
(-3)
A 		4.1
(-2.6)
A 		26
C 6.5
(3)
A 		4.5
(0.7)
A 		5.4
(1.7)
A 		1.3
(-3)
A 		5
avr 22.5
(3) 		3
(-3) 		3.7
(-2.8) 		3.2
(-2.9) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 26.1
(3)
A 		10.3
(-1.1)
A 		3.8
(-2.7)
A 		4.2
(-2.6)
A 		7.4
(-1.8)
A 		2.8
(-3)
A 		23
B 6.8
(-0.8)
A 		15.2
(3)
A 		2.5
(-2.7)
A 		1.8
(-3)
A 		2.6
(-2.6)
A 		2.4
(-2.7)
A 		13
C 33.6
(3)
M 		7.7
(-1.9)
A 		3.1
(-2.8)
A 		3.6
(-2.7)
A 		20.9
(0.6)
A 		1.8
(-3)
A 		32
avr 22.2
(3) 		11.1
(-0.3) 		3.1
(-2.8) 		3.2
(-2.7) 		10.3
(-0.6) 		2.3
(-3) 		20
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175969_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17672
Sequence Type Exemplar sequence
Representative Public ID F41G4.7 NCBI
Target Description F41G4.7 /REP_DB=WormBase Gene ID /WP=CE04552 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078318 NCBI Caenorhabditis elegans F41G4.7 (F41G4.7) mRNA, complete cds. 11/11 A 
SNAP00000036412 ENSEMBL cdna:SNAP chromosome:CEL140:X:16834881:16836291:-1 11/11 None
GENEFINDER00000036421 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16834881:16840215:-1 11/11 None
F41G4.7 ENSEMBL cdna:known chromosome:CEL140:X:16833501:16836308:-1 gene:F41G4.7 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015576 1/11 Cross Hyb Matching Probes None
SNAP00000015577 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015585 2/11 Cross Hyb Matching Probes None
GENEFINDER00000015586 1/11 Cross Hyb Matching Probes None
ZC15.4 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20300338-20301494(+) 96.41 96.41
chrX:16834880-16836035(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G4.7
Entrez Gene 181732 Entrez gene
SwissProt Q8WTN3 EMBL-EBI
WormBase CE29799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 0.0
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 1.0E-122
blast CAB04165 Hypothetical protein F21D9.8 [Caenorhabditis elegans] ref|NP_507749.1| F21D9.8 [Caenorhabditis elegans] 1.0E-13
Sequence
Target Sequence 
>C. ELEGANS:175969_AT
gcaatcgagtcgacgagctcttcaagcaacaagcccacatctctcgccagctcaatctca
tcctagagagcggcccacgtcccttcaagcggattatcatcaatctatgggctcaattca
aggaaagcgattcccaaccaaagcaaatcaccgcgtttgtcaccatccactatcagcatt
cggaaatggctgccctcttcaagaagaccgaagaaaccacgttccatagagagggagacg
tcgtcgagcaagctccatatatcgcaggagcggtgacggccaaacgcaaggaaatcgcaa
gagctgcccacgctctccaaggaccagtggctcagatcactgcatcagtggatcaacact
tcatcagagttggcgcggagcccgagatgccaagaccaatatggacgtcgacaagattga
ccgcatccagtctccgatactccggcaacatcaccacggaattcagacgaaaattggtca
aactgctgagaaccgacagcttccgagacacccaatggatcaccattcttcccctatacc
ctccggatgaagaggctgcccacgacgaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATCGAGTCGACGAGCTCTTCAA 515 321 464 Antisense
AGCTCTTCAAGCAACAAGCCCACAT 154 81 479 Antisense
CCACGTCCCTTCAAGCGGATTATCA 352 275 538 Antisense
AAAGCAAATCACCGCGTTTGTCACC 35 123 603 Antisense
TCACCATCCACTATCAGCATTCGGA 549 625 623 Antisense
TTCGGAAATGGCTGCCCTCTTCAAG 708 691 642 Antisense
GGAGACGTCGTCGAGCAAGCTCCAT 405 517 697 Antisense
GCAGGAGCGGTGACGGCCAAACGCA 334 309 727 Antisense
GAGCCCGAGATGCCAAGACCAATAT 308 385 841 Antisense
TACTCCGGCAACATCACCACGGAAT 648 645 901 Antisense
GATGAAGAGGCTGCCCACGACGAAG 642 411 1009 Antisense
Sequence Source Affymetrix Proprietary Database