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[175968_at]

Description Y5H2B.1 /REP_DB=WormBase Gene ID /WP=CE26220 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 82      4grp_total > 40      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 6.3
(-2.7)
A 		4.9
(-3)
A 		33.8
(3)
A 		8.5
(-2.3)
A 		29
B 3.7
(-3)
A 		10.7
(-2)
A 		44.3
(3)
A 		7.9
(-2.4)
A 		41
C 18.6
(-0.6)
A 		37.2
(3)
A 		6.6
(-3)
A 		36.6
(2.9)
A 		31
avr 9.5
(-3) 		17.6
(-0.4) 		28.2
(3) 		17.7
(-0.4) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 49
1 2 3 4 5 6 range
A 13.6
(-1.4)
A 		7.1
(-2.7)
A 		5.7
(-3)
A 		35.9
(3)
A 		6.2
(-2.9)
A 		9.4
(-2.3)
A 		30
B 45.1
(3)
A 		43.9
(2.8)
A 		36.2
(1.6)
A 		5.7
(-3)
A 		40.7
(2.3)
A 		7.8
(-2.7)
A 		39
C 5.2
(-3)
A 		47.7
(2.2)
A 		29.8
(0)
A 		45.1
(1.9)
M 		54
(3)
A 		34.5
(0.6)
A 		49
avr 21.3
(-1.5) 		32.9
(2.7) 		23.9
(-0.5) 		28.9
(1.3) 		33.6
(3) 		17.2
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 2.3
(-2.1)
A 		1.1
(-3)
A 		8.8
(3)
A 		1.2
(-2.9)
A 		8
B 1.2
(-3)
A 		2.7
(-2)
A 		10.3
(3)
A 		1.7
(-2.7)
A 		9
C 6.1
(-0.3)
A 		10.7
(3)
A 		2.3
(-3)
A 		6.2
(-0.2)
A 		8
avr 3.2
(-2.7) 		4.8
(-0.4) 		7.1
(3) 		3
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 2.5
(-2)
A 		2.5
(-2)
A 		1.2
(-3)
A 		9.1
(3)
A 		1.9
(-2.5)
A 		2.3
(-2.2)
A 		8
B 15.7
(2.7)
A 		14.6
(2.2)
A 		8.8
(-0.1)
A 		1.5
(-3)
A 		16.5
(3)
A 		2.9
(-2.4)
A 		15
C 1.9
(-3)
A 		14.6
(1.9)
A 		7.6
(-0.8)
A 		9.1
(-0.2)
M 		17.5
(3)
A 		11.6
(0.7)
A 		16
avr 6.7
(-2) 		10.6
(1.7) 		5.9
(-2.7) 		6.6
(-2.1) 		12
(3) 		5.6
(-3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175968_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14934
Sequence Type Exemplar sequence
Representative Public ID Y5H2B.1 NCBI
Target Description Y5H2B.1 /REP_DB=WormBase Gene ID /WP=CE26220 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_071200(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_071200 NCBI Caenorhabditis elegans Y5H2B.1 (Y5H2B.1) mRNA, complete cds. 11/11 None
Y5H2B.1 ENSEMBL cdna:known chromosome:CEL140:V:2207008:2210037:1 gene:Y5H2B.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:2207007-2210037(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y5H2B.1
Entrez Gene 189361 Entrez gene
SwissProt Q966A0 EMBL-EBI
WormBase CE26220 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
5975 carbohydrate metabolism inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
5794 Golgi apparatus inferred from electronic annotation QuickGO AmiGO
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
8107 galactoside 2-alpha-L-fucosyltransferase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast NP_503601 Y5H2B.1 [Caenorhabditis elegans] gb|AAK84621.1| Hypothetical protein Y5H2B.1 [Caenorhabditis elegans] 0.0
blast NP_503283 F31F4.17 [Caenorhabditis elegans] gb|AAG24094.1| Hypothetical protein F31F4.17 [Caenorhabditis elegans] 1.0E-129
blast CAE71087 Hypothetical protein CBG17937 [Caenorhabditis briggsae] 1.0E-105
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503601.1 1 20-42
Y5H2B.1 1 20-42
Sequence
Target Sequence 
>C. ELEGANS:175968_AT
gagatgagtatttgcacctctccggaaaatattatcagagctggaaatatttccccaata
tgcgaaatgaacttatcgagttcttaaatcctacatcgattcaaatttttggcaatctgc
caatttccgatgatcaaaatcacgtaacttgtgttcattctagaagaggcgattttgttg
aatacctcttctatgcgtcggatccaaagtttatgaaaaatgcagtaacatttctgaatg
aaaatgaaaaagtaggaagtagaaatcgaaaaatagtattatttggcgacgatttgaatt
ttttggaaacttattttagtgatgcagtattatctacagatgtcggaaaaaatgcagaat
attatatttctcaaaaccctccaatcgacgattttctctattcaaaaaataattgtgatg
tggtactgatcacagctccccgctcaacattcggctggtggattgggtatttttcgaaag
gaaacaaagtttactatctggatattaaatacactggggatcatatttttgaatctggag
gtcttattgcaagtgacttctacccatcacactggacgcctctgaaatttgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGATGAGTATTTGCACCTCTCCGG 218 395 482 Antisense
GCACCTCTCCGGAAAATATTATCAG 209 315 495 Antisense
GAGTTCTTAAATCCTACATCGATTC 6 399 559 Antisense
GCAATCTGCCAATTTCCGATGATCA 538 321 593 Antisense
TCACGTAACTTGTGTTCATTCTAGA 269 625 621 Antisense
GGCGATTTTGTTGAATACCTCTTCT 75 541 649 Antisense
CTCTTCTATGCGTCGGATCCAAAGT 84 231 667 Antisense
CCAATCGACGATTTTCTCTATTCAA 164 277 862 Antisense
GATGTGGTACTGATCACAGCTCCCC 369 409 898 Antisense
GGAGGTCTTATTGCAAGTGACTTCT 253 515 1018 Antisense
CACACTGGACGCCTCTGAAATTTGC 237 195 1049 Antisense
Sequence Source Affymetrix Proprietary Database