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[175967_s_at]

Description F41G4.6 /REP_DB=WormBase Gene ID /WP=CE04551 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 33      4grp_total > 07      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 14.9
(-3)
A 		15.6
(-2)
A 		18.9
(3)
A 		15.4
(-2.3)
A 		4
B 11.2
(-0.1)
A 		9.2
(-2.1)
A 		8.3
(-3)
A 		14.3
(3)
A 		6
C 11.6
(3)
A 		9.5
(-1.5)
A 		10.5
(0.6)
A 		8.8
(-3)
A 		3
avr 12.6
(2.1) 		11.4
(-3) 		12.6
(2.1) 		12.8
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 72
(3)
A 		13.4
(-2.5)
A 		11.8
(-2.7)
A 		15
(-2.4)
A 		8.1
(-3)
A 		12.7
(-2.6)
A 		64
B 16.9
(-0.3)
A 		31
(3)
A 		8.8
(-2.2)
A 		7.4
(-2.5)
A 		5.2
(-3)
A 		7.9
(-2.4)
A 		26
C 5.9
(-3)
A 		13.7
(-2.1)
A 		59.5
(3)
A 		10.8
(-2.5)
A 		7
(-2.9)
A 		6.3
(-3)
A 		54
avr 31.6
(3) 		19.4
(0) 		26.7
(1.8) 		11.1
(-2) 		6.8
(-3) 		9
(-2.5) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 4
1 2 3 4 range
A 5.4
(3)
A 		3.4
(-0.8)
A 		4.9
(2.1)
A 		2.2
(-3)
A 		3
B 3.6
(3)
A 		2.3
(-1.6)
A 		1.9
(-3)
A 		3
(0.9)
A 		2
C 3.8
(3)
A 		2.7
(0.1)
A 		3.7
(2.7)
A 		1.5
(-3)
A 		2
avr 4.3
(3) 		2.8
(-1.3) 		3.5
(0.7) 		2.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 13.3
(3)
A 		4.8
(-1.7)
A 		2.6
(-2.9)
A 		3.8
(-2.2)
A 		2.4
(-3)
A 		3.1
(-2.6)
A 		11
B 5.9
(-0.1)
A 		10.3
(3)
A 		2.1
(-2.9)
A 		1.9
(-3)
A 		2.1
(-2.9)
A 		2.9
(-2.3)
A 		8
C 2.2
(-3)
A 		4.2
(-2)
A 		15.1
(3)
A 		2.2
(-3)
A 		2.3
(-2.9)
A 		2.1
(-3)
A 		13
avr 7.1
(3) 		6.4
(2.1) 		6.6
(2.4) 		2.6
(-2.6) 		2.3
(-3) 		2.7
(-2.5) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 175967_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17531
Sequence Type Exemplar sequence
Representative Public ID F41G4.6 NCBI
Target Description F41G4.6 /REP_DB=WormBase Gene ID /WP=CE04551 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078318(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078318 NCBI Caenorhabditis elegans F41G4.7 (F41G4.7) mRNA, complete cds. 11/11 A 
SNAP00000036411 ENSEMBL cdna:SNAP chromosome:CEL140:X:16833595:16834704:-1 11/11 None
GENEFINDER00000036422 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16833595:16834704:-1 11/11 None
F41G4.7 ENSEMBL cdna:known chromosome:CEL140:X:16833501:16836308:-1 gene:F41G4.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20301670-20302885(+) 82.15 96.32
chrX:16833594-16834704(-) 85.65 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G4.7
Entrez Gene 181732 Entrez gene
SwissProt Q8WTN3 EMBL-EBI
WormBase CE29799 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 0.0
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 1.0E-168
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 1.0E-126
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 1.0E-122
blast CAB04165 Hypothetical protein F21D9.8 [Caenorhabditis elegans] ref|NP_507749.1| F21D9.8 [Caenorhabditis elegans] 7.0E-14
Sequence
Target Sequence 
>C. ELEGANS:175967_S_AT
gccgaggacaaccgtatggcctcaaaagcgagagacaggatcatttacgacatcgcccag
gtcgcaatcaacatgaagacgatgagcgagaccatcgccaaaatcgacgctcgtgaggaa
caggctgcccaaaagcaagccgagcgctacaccccgcaaggaggacagggatcattggag
ccagtgctgaagtgcccactgtgcaaacgtcatcacgctccggaaaactgcaccatcatc
agaaatggactcga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCCGAGGACAACCGTATGGCCTCAA 401 283 496 Antisense
GGACAACCGTATGGCCTCAAAAGCG 276 527 501 Antisense
ACCGTATGGCCTCAAAAGCGAGAGA 165 89 506 Antisense
CGCCCAGGTCGCAATCAACATGAAG 305 257 549 Antisense
AGGTCGCAATCAACATGAAGACGAT 709 57 554 Antisense
GCTACACCCCGCAAGGAGGACAGGG 458 287 641 Antisense
GGACAGGGATCATTGGAGCCAGTGC 17 523 658 Antisense
GGGATCATTGGAGCCAGTGCTGAAG 127 497 663 Antisense
TCATTGGAGCCAGTGCTGAAGTGCC 127 619 667 Antisense
GGAAAACTGCACCATCATCAGAAAT 572 527 717 Antisense
GCACCATCATCAGAAATGGACTCGA 67 315 725 Antisense
Sequence Source Affymetrix Proprietary Database