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[175966_at]

Description F10E9.2 /REP_DB=WormBase Gene ID /WP=CE24893 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 76      6grp_total > 87      4grp_total > 09      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 61.1
(-2.7)
P 		63.4
(-2.5)
A 		58.4
(-3)
M 		116.1
(3)
M 		58
B 47.3
(-2.1)
P 		56.5
(-0.8)
A 		83.2
(3)
P 		41.3
(-3)
P 		42
C 59.6
(-1.6)
P 		54.7
(-2.1)
A 		45.4
(-3)
A 		105.6
(3)
P 		60
avr 56
(-3) 		58.2
(-2.6) 		62.3
(-1.8) 		87.7
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 95
1 2 3 4 5 6 range
A 61.1
(-0.3)
A 		67.3
(0.1)
M 		26.5
(-3)
A 		61.8
(-0.3)
P 		81.6
(1.2)
P 		104.7
(3)
P 		78
B 53.7
(-0.3)
P 		24.9
(-3)
A 		40.5
(-1.6)
A 		72.1
(1.4)
P 		90
(3)
P 		63.5
(0.6)
P 		65
C 56.6
(-3)
P 		85.4
(-0.2)
P 		66.5
(-2.1)
P 		77.8
(-1)
A 		56.8
(-3)
P 		119.4
(3)
P 		63
avr 57.1
(-1.5) 		59.2
(-1.3) 		44.5
(-3) 		70.6
(0) 		76.1
(0.7) 		95.9
(3) 		51
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 22.2
(3)
P 		13.8
(-3)
A 		15.3
(-1.9)
M 		17
(-0.7)
M 		8
B 15.1
(0.6)
P 		14
(-0)
A 		19.3
(3)
P 		8.8
(-3)
P 		11
C 19.7
(3)
P 		15.7
(-3)
A 		15.8
(-2.9)
A 		17.8
(0.2)
P 		4
avr 19
(3) 		14.5
(-3) 		16.8
(0.1) 		14.5
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 34
1 2 3 4 5 6 range
A 11.3
(-1.3)
A 		23.9
(2.5)
M 		5.8
(-3)
A 		15.7
(0)
P 		24.6
(2.7)
P 		25.5
(3)
P 		20
B 18.7
(-0.8)
P 		8.3
(-3)
A 		9.8
(-2.7)
A 		19.1
(-0.7)
P 		36.6
(3)
P 		23.7
(0.3)
P 		28
C 21
(-1.7)
P 		26.1
(-0.4)
P 		16.9
(-2.7)
P 		15.7
(-3)
A 		18.4
(-2.3)
P 		40
(3)
P 		24
avr 17
(-1) 		19.4
(-0.3) 		10.8
(-3) 		16.8
(-1.1) 		26.5
(2) 		29.7
(3) 		19
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175966_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7644
Sequence Type Exemplar sequence
Representative Public ID F10E9.2 NCBI
Target Description F10E9.2 /REP_DB=WormBase Gene ID /WP=CE24893 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066426(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066426 NCBI Caenorhabditis elegans F10E9.2 (F10E9.2) mRNA, complete cds. 11/11 None
SNAP00000040909 ENSEMBL cdna:SNAP chromosome:CEL140:III:8312722:8314201:1 11/11 None
GENEFINDER00000040922 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8312722:8314201:1 11/11 None
F10E9.2 ENSEMBL cdna:known chromosome:CEL140:III:8312634:8314201:1 gene:F10E9.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8312629-8314197(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F10E9.2
Entrez Gene 176171 Entrez gene
SwissProt P34396 EMBL-EBI
WormBase CE24893 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA28013 Hypothetical protein F10E9.2 [Caenorhabditis elegans] ref|NP_498827.1| F10E9.2 [Caenorhabditis elegans] sp|P34396|YLU2_CAEEL Hypothetical protein F10E9.2 in chromosome III 1.0E-132
blast AAA28013 Hypothetical protein F10E9.2 [Caenorhabditis elegans] ref|NP_498827.1| F10E9.2 [Caenorhabditis elegans] sp|P34396|YLU2_CAEEL Hypothetical protein F10E9.2 in chromosome III 1.0E-124
blast CAE70166 Hypothetical protein CBG16636 [Caenorhabditis briggsae] 5.0E-72
blast CAE70166 Hypothetical protein CBG16636 [Caenorhabditis briggsae] 8.0E-66
Sequence
Target Sequence 
>C. ELEGANS:175966_AT
aaagaaaaccactcgtcttgtgccacttcgacatctccgtcaaatgcttttacgcgtgaa
gtctcaccgcaacaaattgctgagcatactggagaattgtcgaataatggagctgaacgt
ggaaagattcgaggaagtactcgtgctactcggaaaggatctgtgaacaaatcaaaaagt
ggaaggactcgtcgacataagaaggttccggatcaacgtctttggtactttttgtacctt
tcaaagccagtcgttgtcagccttccaacggatgccacttatcacgatctgatggctcga
ctctacacgcttcttggtgtcagcggtaagacccatatgattactctgagaactcagaaa
tcatcgagtgaagaaggcgaaggcgagttttctggtcgaggtgacccggctcctcttgaa
gtcggcgattcgaaaactcgtctcagtgatctaaagattacacgtcacaagatgctgctc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAAGAAAACCACTCGTCTTGTGCCA 280 115 250 Antisense
CGACATCTCCGTCAAATGCTTTTAC 95 253 278 Antisense
TTACGCGTGAAGTCTCACCGCAACA 145 683 299 Antisense
GTTCCGGATCAACGTCTTTGGTACT 621 441 454 Antisense
GTACCTTTCAAAGCCAGTCGTTGTC 95 115 483 Antisense
AGTCGTTGTCAGCCTTCCAACGGAT 395 61 498 Antisense
CAACGGATGCCACTTATCACGATCT 415 187 515 Antisense
TCACGATCTGATGGCTCGACTCTAC 163 627 531 Antisense
TTTTCTGGTCGAGGTGACCCGGCTC 312 677 637 Antisense
GTCGGCGATTCGAAAACTCGTCTCA 78 473 670 Antisense
GATTACACGTCACAAGATGCTGCTC 433 429 705 Antisense
Sequence Source Affymetrix Proprietary Database