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[175961_at]

Description Y50D4C.F /REP_DB=WormBase Gene ID /WP=CE22291 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster 6grp_total > 31      4grp_total > 58      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 75
1 2 3 4 range
A 25
(-3)
A 		53.1
(1.2)
A 		65.3
(3)
A 		59
(2.1)
A 		40
B 47
(0.5)
A 		78.3
(3)
A 		43.3
(0.2)
A 		3.5
(-3)
A 		75
C 37.2
(3)
A 		19
(-1.4)
A 		32.6
(1.9)
A 		12.5
(-3)
A 		25
avr 36.4
(-0.3) 		50.1
(3) 		47.1
(2.3) 		25
(-3) 		25

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 45.9
(0.1)
A 		33.8
(-1.1)
A 		47.8
(0.3)
A 		67.3
(2.3)
A 		73.8
(3)
A 		15.3
(-3)
A 		59
B 29
(-0.2)
A 		37
(2.8)
A 		37.4
(3)
A 		28
(-0.5)
A 		21.5
(-3)
A 		26.9
(-1)
A 		16
C 45.7
(-1.3)
A 		85.1
(3)
A 		70
(1.3)
A 		48.8
(-1)
A 		52.7
(-0.5)
A 		30.3
(-3)
A 		55
avr 40.2
(0.5) 		52
(3) 		51.7
(2.9) 		48
(2.1) 		49.3
(2.4) 		24.2
(-3) 		28
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 9.1
(-2.6)
A 		11.5
(-1)
A 		17.1
(3)
A 		8.6
(-3)
A 		9
B 15
(1.6)
A 		19.3
(3)
A 		10
(0)
A 		0.7
(-3)
A 		19
C 12.3
(3)
A 		5.5
(-1)
A 		11.4
(2.5)
A 		2.1
(-3)
A 		10
avr 12.1
(2.5) 		12.1
(2.5) 		12.8
(3) 		3.8
(-3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 8.5
(-1.5)
A 		12
(-0.3)
A 		10.4
(-0.8)
A 		17.1
(1.3)
A 		22.3
(3)
A 		3.7
(-3)
A 		19
B 10.1
(0.3)
A 		12.3
(3)
A 		9.1
(-0.9)
A 		7.4
(-3)
A 		8.7
(-1.4)
A 		10
(0.2)
A 		5
C 16.9
(-0.4)
A 		26
(3)
A 		17.8
(-0)
A 		9.8
(-3)
A 		17
(-0.3)
A 		10.2
(-2.9)
A 		16
avr 11.8
(-0.4) 		16.8
(3) 		12.4
(0) 		11.4
(-0.7) 		16
(2.5) 		8
(-3) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175961_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19540
Sequence Type Exemplar sequence
Representative Public ID Y50D4C.F NCBI
Target Description Y50D4C.F /REP_DB=WormBase Gene ID /WP=CE22291 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS)
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y50D4C.F
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y50D4C.F Y50D4C.F /REP_DB=WormBase Gene ID /WP=CE22291 /CHR=5 /FEA=Sanger Annotation /DEF=(ST.LOUIS) None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_070956 10/11 Negative Strand Matching Probes A 
SNAP00000044731 10/11 Negative Strand Matching Probes None
GENEFINDER00000044745 10/11 Negative Strand Matching Probes None
Y50D4C.2 10/11 Negative Strand Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:938659-938977(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:175961_AT
gaattcatcgatcagcagcttcttgttcatgtagtcgtcgacgagtctcggcacactttc
cacggatttccatccgccgaatgcggttcccttccacgtgcgtccggtgacaagttggaa
tgggcgggtggcgatctcttggccggctccggcgactccgatgatacacgagactcccca
tcctttgtgagcggcttcgagggcttgacgctggaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTCATCGATCAGCAGCTTCTTG 260 325 22 Antisense
CGATCAGCAGCTTCTTGTTCATGTA 556 247 30 Antisense
GCTTCTTGTTCATGTAGTCGTCGAC 389 303 39 Antisense
TAGTCGTCGACGAGTCTCGGCACAC 86 655 53 Antisense
GATTTCCATCCGCCGAATGCGGTTC 678 425 86 Antisense
CCACGTGCGTCCGGTGACAAGTTGG 43 275 115 Antisense
GTTGGAATGGGCGGGTGGCGATCTC 49 435 135 Antisense
CTCCGGCGACTCCGATGATACACGA 290 235 168 Antisense
ACTCCGATGATACACGAGACTCCCC 245 99 176 Antisense
CCATCCTTTGTGAGCGGCTTCGAGG 368 271 199 Antisense
GCTTCGAGGGCTTGACGCTGGAAAA 142 305 215 Antisense
Sequence Source Affymetrix Proprietary Database