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[175959_at]

Description F41G4.4 /REP_DB=WormBase Gene ID /WP=CE04549 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 42      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 39
1 2 3 4 range
A 29.9
(-0.8)
M 		54.6
(3)
A 		15.7
(-3)
A 		37.5
(0.4)
A 		39
B 27.5
(-0.7)
A 		20.8
(-3)
A 		38.5
(3)
A 		29.1
(-0.2)
A 		18
C 31.3
(1.5)
A 		20.3
(-3)
A 		32.3
(1.9)
A 		35
(3)
A 		15
avr 29.6
(-2.1) 		31.9
(0.6) 		28.8
(-3) 		33.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 46.5
(0.2)
A 		46.2
(0.1)
A 		58.7
(3)
A 		47.2
(0.3)
P 		42.8
(-0.7)
A 		32.9
(-3)
M 		26
B 11.8
(-3)
A 		45.8
(3)
A 		26.2
(-0.5)
A 		15.2
(-2.4)
A 		20.4
(-1.5)
A 		26.9
(-0.3)
A 		34
C 49
(2.6)
A 		14.1
(-3)
A 		46
(2.2)
P 		51.2
(3)
M 		38.3
(0.9)
A 		19.6
(-2.1)
A 		37
avr 35.8
(0.3) 		35.4
(0.1) 		43.6
(3) 		37.9
(1) 		33.8
(-0.4) 		26.5
(-3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 8
1 2 3 4 range
A 10.9
(2.2)
M 		11.9
(3)
A 		4.1
(-3)
A 		5.5
(-1.9)
A 		8
B 8.8
(2.8)
A 		5.1
(-3)
A 		8.9
(3)
A 		6.2
(-1.3)
A 		4
C 10.4
(2.1)
A 		5.8
(-3)
A 		11.2
(3)
A 		5.9
(-2.9)
A 		5
avr 10
(3) 		7.6
(-0.5) 		8.1
(0.2) 		5.9
(-3) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 8.6
(-2.6)
A 		16.4
(3)
A 		12.8
(0.4)
A 		12
(-0.1)
P 		12.9
(0.5)
A 		8
(-3)
M 		8
B 4.1
(-2.9)
A 		15.3
(3)
A 		6.4
(-1.7)
A 		4
(-3)
A 		8.3
(-0.7)
A 		10
(0.2)
A 		11
C 18.2
(3)
A 		4.3
(-3)
A 		11.7
(0.2)
P 		10.3
(-0.4)
M 		12.4
(0.5)
A 		6.5
(-2.1)
A 		14
avr 10.3
(0.3) 		12
(3) 		10.3
(0.3) 		8.8
(-2.1) 		11.2
(1.7) 		8.2
(-3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175959_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17997
Sequence Type Exemplar sequence
Representative Public ID F41G4.4 NCBI
Target Description F41G4.4 /REP_DB=WormBase Gene ID /WP=CE04549 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078315(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078315 NCBI Caenorhabditis elegans F41G4.4 (F41G4.4) mRNA, complete cds. 10/11 A 
GENEFINDER00000036419 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16829998:16830581:-1 11/11 None
F41G4.4 ENSEMBL cdna:known chromosome:CEL140:X:16829998:16830580:-1 gene:F41G4.4 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:16829997-16830581(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl F41G4.4
Entrez Gene 185635 Entrez gene
SwissProt Q95YA7 EMBL-EBI
WormBase CE34556 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85484 Hypothetical protein F41G4.4 [Caenorhabditis elegans] ref|NP_510716.2| F41G4.4 [Caenorhabditis elegans] 3.0E-92
blast CAB07709 Hypothetical protein ZC15.1 [Caenorhabditis elegans] ref|NP_507916.1| ZC15.1 [Caenorhabditis elegans] 7.0E-72
blast CAB07709 Hypothetical protein ZC15.1 [Caenorhabditis elegans] ref|NP_507916.1| ZC15.1 [Caenorhabditis elegans] 1.0E-63
blast AAK84516 Hypothetical protein F07B7.7 [Caenorhabditis elegans] gb|AAA96111.1| Hypothetical protein ZC411.1 [Caenorhabditis elegans] ref|NP_505287.1| ZC411.1 [Caenorhabditis elegans] ref|NP_505272.1| F07B7.7 [Caenorhabditis elegans] 8.0E-14
blast AAK84516 Hypothetical protein F07B7.7 [Caenorhabditis elegans] gb|AAA96111.1| Hypothetical protein ZC411.1 [Caenorhabditis elegans] ref|NP_505287.1| ZC411.1 [Caenorhabditis elegans] ref|NP_505272.1| F07B7.7 [Caenorhabditis elegans] 2.0E-13
Sequence
Target Sequence 
>C. ELEGANS:175959_AT
atggcaaacccagagcttcaacatcaggaggaaatgagactggccgctgccatgcaaaag
gatacactggtgtatagagacggaacccgcgttcatgacatcatcaagctcgaattcacg
atcacgaaaaacccaccggctgccctcaaggcgtaccaggcgcgaaatacctggatgcag
caacaactgacaggactgaaacccaaagacgtcctcgtaggcttcgaacctaacgacgtc
aagcaatactatcgctttctcctggctgccacccactggctctggaaagtcataaaggca
aaaatgatcgtgaacgtcacagcatccagctgcacacagcagatcgcaattggaaacgca
tccggccaccagatgtttatcccgaccttttcgctcttcgtgagacgccgcagtgaggtc
caagtccaaaactggtactcgcacgtctggagtcatctcttcagcacactgcaacaacat
ccggcttacaattgtcactgccac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGGCAAACCCAGAGCTTCAACATC 288 53 13 Antisense
GGCTCTGGAAAGTCATAAAGGCAAA 203 535 290 Antisense
CCGCAGTGAGGTCCAAGTCCAAAAC 23 263 420 Antisense
GTCCAAGTCCAAAACTGGTACTCGC 525 455 430 Antisense
CAAAACTGGTACTCGCACGTCTGGA 105 189 439 Antisense
TACTCGCACGTCTGGAGTCATCTCT 249 647 448 Antisense
TCATCTCTTCAGCACACTGCAACAA 696 619 465 Antisense
TTCAGCACACTGCAACAACATCCGG 648 687 472 Antisense
TGCAACAACATCCGGCTTACAATTG 124 573 482 Antisense
ACATCCGGCTTACAATTGTCACTGC 291 105 489 Antisense
TCCGGCTTACAATTGTCACTGCCAC 215 595 492 Antisense
Sequence Source Affymetrix Proprietary Database