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[175958_at]

Description ZK112.6 /REP_DB=WormBase Gene ID /WP=CE00377 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 36      4grp_total > 14      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 86
1 2 3 4 range
A 40.2
(2.6)
A 		29.7
(0.6)
A 		10
(-3)
A 		42.4
(3)
A 		32
B 43.3
(2)
A 		3.4
(-3)
A 		25
(-0.3)
A 		51.6
(3)
P 		48
C 49.6
(-0.2)
A 		15.3
(-3)
A 		23.9
(-2.3)
A 		89.8
(3)
A 		75
avr 44.4
(0.8) 		16.1
(-3) 		19.6
(-2.5) 		61.3
(3) 		45

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 62
1 2 3 4 5 6 range
A 35.7
(2.4)
A 		24.6
(0.6)
A 		24
(0.5)
A 		2.4
(-3)
A 		5.1
(-2.6)
A 		39.3
(3)
A 		37
B 30.5
(1.8)
A 		37
(3)
A 		3.8
(-3)
A 		5.8
(-2.6)
A 		18.6
(-0.3)
A 		5.1
(-2.8)
A 		33
C 36.4
(0.2)
A 		64.6
(3)
A 		22.5
(-1.2)
A 		6.6
(-2.8)
A 		4.2
(-3)
A 		25.7
(-0.9)
A 		60
avr 34.2
(1.7) 		42.1
(3) 		16.8
(-1.1) 		4.9
(-3) 		9.3
(-2.3) 		23.4
(-0) 		37
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 14.6
(3)
A 		6.5
(-1.1)
A 		2.6
(-3)
A 		6.2
(-1.2)
A 		12
B 13.8
(3)
A 		0.8
(-3)
A 		5.8
(-0.7)
A 		11
(1.7)
P 		13
C 16.4
(3)
A 		4.4
(-3)
A 		8.3
(-1.1)
A 		15.1
(2.4)
A 		12
avr 14.9
(3) 		3.9
(-3) 		5.6
(-2.1) 		10.8
(0.8) 		11

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 6.6
(1)
A 		8.8
(2.5)
A 		5.2
(0.1)
A 		0.6
(-3)
A 		1.6
(-2.3)
A 		9.6
(3)
A 		9
B 10.6
(2.1)
A 		12.3
(3)
A 		0.9
(-3)
A 		1.5
(-2.7)
A 		7.6
(0.5)
A 		1.9
(-2.5)
A 		11
C 13.5
(1)
A 		19.7
(3)
A 		5.7
(-1.6)
A 		1.3
(-3)
A 		1.3
(-3)
A 		8.6
(-0.6)
A 		18
avr 10.2
(1.4) 		13.6
(3) 		3.9
(-1.7) 		1.1
(-3) 		3.5
(-1.8) 		6.7
(-0.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175958_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7741
Sequence Type Exemplar sequence
Representative Public ID ZK112.6 NCBI
Target Description ZK112.6 /REP_DB=WormBase Gene ID /WP=CE00377 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066285(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066285 NCBI Caenorhabditis elegans ZK112.6 (ZK112.6) mRNA, complete cds. 11/11 None
SNAP00000003595 ENSEMBL cdna:SNAP chromosome:CEL140:III:7738021:7740464:-1 11/11 None
GENEFINDER00000003618 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:7738080:7740464:-1 11/11 None
ZK112.6 ENSEMBL cdna:known chromosome:CEL140:III:7739778:7740033:-1 gene:ZK112.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:7739775-7740031(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK112.6
Entrez Gene 191229 Entrez gene
SwissProt P34615 EMBL-EBI
WormBase CE00377 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE66869 Hypothetical protein CBG12246 [Caenorhabditis briggsae] 1.0E-115
blast CAE66869 Hypothetical protein CBG12246 [Caenorhabditis briggsae] 1.0E-105
blast AAA28184 Hypothetical protein ZK112.5 [Caenorhabditis elegans] ref|NP_498685.1| ZK112.5 [Caenorhabditis elegans] sp|P34614|YOG5_CAEEL Hypothetical protein ZK112.5 in chromosome III 2.0E-86
blast AAA28184 Hypothetical protein ZK112.5 [Caenorhabditis elegans] ref|NP_498685.1| ZK112.5 [Caenorhabditis elegans] sp|P34614|YOG5_CAEEL Hypothetical protein ZK112.5 in chromosome III 2.0E-59
blast AAA28183 Hypothetical protein ZK112.6 [Caenorhabditis elegans] ref|NP_498686.1| ZK112.6 [Caenorhabditis elegans] sp|P34615|YOG6_CAEEL Hypothetical protein ZK112.6 in chromosome III 4.0E-31
blast AAA28183 Hypothetical protein ZK112.6 [Caenorhabditis elegans] ref|NP_498686.1| ZK112.6 [Caenorhabditis elegans] sp|P34615|YOG6_CAEEL Hypothetical protein ZK112.6 in chromosome III 4.0E-26
blast CAE66869 Hypothetical protein CBG12246 [Caenorhabditis briggsae] 4.0E-13
Sequence
Target Sequence 
>C. ELEGANS:175958_AT
atgcaacttcccttgacaattttagcagcatatcgagttggtttgattggaattgttatg
gaccctcttgtctcaaaaaataaagttttagaaaaaataataatgtgtgaaaaaccaaga
attgtggttactgtagacgcagtttggcaggctcaagagctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGCAACTTCCCTTGACAATTTTAG 511 43 13 Antisense
TTCCCTTGACAATTTTAGCAGCATA 117 697 20 Antisense
TTAGCAGCATATCGAGTTGGTTTGA 344 669 34 Antisense
GCATATCGAGTTGGTTTGATTGGAA 45 309 40 Antisense
GATTGGAATTGTTATGGACCCTCTT 555 435 57 Antisense
GAATTGTTATGGACCCTCTTGTCTC 685 323 62 Antisense
GTTATGGACCCTCTTGTCTCAAAAA 329 433 67 Antisense
TGGACCCTCTTGTCTCAAAAAATAA 290 549 71 Antisense
CAAGAATTGTGGTTACTGTAGACGC 298 185 128 Antisense
TGTAGACGCAGTTTGGCAGGCTCAA 655 557 144 Antisense
GCAGTTTGGCAGGCTCAAGAGCTCA 83 313 151 Antisense
Sequence Source Affymetrix Proprietary Database