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[175955_at]

Description D2007.4 /REP_DB=WormBase Gene ID /WP=CE00129 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 68      6grp_high1_10_10 > 85      4grp_highest_8_8 > 14      4grp_high_8_8 > 22      6grp_highest_nonorm > 87      6grp_total > 75      4grp_total > 16      6grp_highest_sub > In      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1167
1 2 3 4 range
A 1185
(-3)
P 		1377.3
(-1.3)
P 		1437.2
(-0.8)
P 		1864.5
(3)
P 		680
B 1300.4
(-3)
P 		1551.5
(-1.6)
P 		1765.1
(-0.3)
P 		2351.6
(3)
P 		1051
C 1318.2
(-3)
P 		1692.4
(-0.5)
P 		1541.6
(-1.5)
P 		2226
(3)
P 		908
avr 1267.9
(-3) 		1540.4
(-1.1) 		1581.3
(-0.9) 		2147.4
(3) 		880

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 671
1 2 3 4 5 6 range
A 1106.6
(-1.5)
P 		1012.9
(-3)
P 		1253
(0.8)
P 		1211.4
(0.1)
P 		1184.4
(-0.3)
P 		1392.3
(3)
P 		379
B 1027.5
(-3)
P 		1039.2
(-2.8)
P 		1456.7
(3)
P 		1093.2
(-2.1)
P 		1387.6
(2)
P 		1246.1
(0.1)
P 		429
C 951.7
(-2.8)
P 		1029.6
(-2.1)
P 		1213.2
(-0.4)
P 		925.5
(-3)
P 		1199.5
(-0.5)
P 		1596.5
(3)
P 		671
avr 1028.6
(-3) 		1027.2
(-3) 		1307.6
(1.4) 		1076.7
(-2.2) 		1257.2
(0.6) 		1411.6
(3) 		384
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 264
1 2 3 4 range
A 431.5
(3)
P 		299
(-2)
P 		375.7
(0.9)
P 		272.9
(-3)
P 		159
B 414.7
(-1.4)
P 		383.2
(-3)
P 		409
(-1.7)
P 		501.1
(3)
P 		118
C 436.3
(-0.7)
P 		486.6
(1.1)
P 		537.3
(3)
P 		375.3
(-3)
P 		162
avr 427.5
(1.6) 		389.6
(-2.3) 		440.7
(3) 		383.1
(-3) 		58

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 378
1 2 3 4 5 6 range
A 204
(-3)
P 		360.2
(3)
P 		272.9
(-0.4)
P 		307.2
(1)
P 		357.4
(2.9)
P 		339
(2.2)
P 		156
B 357.5
(-1.5)
P 		345.9
(-1.8)
P 		353.7
(-1.6)
P 		289.6
(-3)
P 		563.8
(3)
P 		464.7
(0.8)
P 		274
C 352.8
(-0.1)
P 		314.2
(-0.8)
P 		308.8
(-0.9)
P 		186.1
(-3)
P 		388.1
(0.5)
P 		534.4
(3)
P 		348
avr 304.8
(-1.6) 		340.1
(-0.4) 		311.8
(-1.4) 		261
(-3) 		436.4
(2.7) 		446
(3) 		185
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 175955_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6357
Sequence Type Exemplar sequence
Representative Public ID D2007.4 NCBI
Target Description D2007.4 /REP_DB=WormBase Gene ID /WP=CE00129 /SUBMIT=ST.LOUIS /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_066377(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_066377 NCBI Caenorhabditis elegans D2007.4 (D2007.4) mRNA, complete cds. 11/11 None
SNAP00000026068 ENSEMBL cdna:SNAP chromosome:CEL140:III:8144939:8145776:1 11/11 None
GENEFINDER00000026072 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:8144939:8145776:1 11/11 None
D2007.4 ENSEMBL cdna:known chromosome:CEL140:III:8144936:8145895:1 gene:D2007.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:8144934-8145772(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl D2007.4
Entrez Gene 183940 Entrez gene
SwissProt P34378 EMBL-EBI
WormBase CE00129 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAA27999 Hypothetical protein D2007.4 [Caenorhabditis elegans] ref|NP_498778.1| D2007.4 [Caenorhabditis elegans] sp|P34378|YLM4_CAEEL Hypothetical protein D2007.4 in chromosome III 4.0E-94
blast AAA27999 Hypothetical protein D2007.4 [Caenorhabditis elegans] ref|NP_498778.1| D2007.4 [Caenorhabditis elegans] sp|P34378|YLM4_CAEEL Hypothetical protein D2007.4 in chromosome III 4.0E-91
blast CAE70201 Hypothetical protein CBG16676 [Caenorhabditis briggsae] 4.0E-86
blast CAE70201 Hypothetical protein CBG16676 [Caenorhabditis briggsae] 4.0E-83
blast XP_790603 PREDICTED: similar to mitochondrial ribosomal protein L18 [Strongylocentrotus purpuratus] 4.0E-18
Sequence
Target Sequence 
>C. ELEGANS:175955_AT
gctgctcgatttgccagagggtttgtgaatcgaaatccacggaacaatgaacttatggga
agacaagcgccgaacacaggttatcaatttgaaaaggaccgtgctgctcgaagttacatt
tataaagtagagcttgtggaaggaaaatcccatcgtgaaggccgccttgtacattatcaa
gatggagttgtaatcagtgcttcaacaaaagaaccttcaattgccagtcagctatacagt
aaaactgatacatctgctgcattgaatattggacgagttttggcccttcgttgtcttcaa
tctggaattcactttgctatgcctggagcaactaaagaagctatcgagaagagccaacat
caaacacacttcttcaaagctctggaagaggaaggtctcacactaaaagaaccggccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCTGCTCGATTTGCCAGAGGGTTTG 578 297 16 Antisense
GACAAGCGCCGAACACAGGTTATCA 100 365 77 Antisense
GAAAAGGACCGTGCTGCTCGAAGTT 10 353 106 Antisense
AGGAAAATCCCATCGTGAAGGCCGC 337 15 156 Antisense
GTGAAGGCCGCCTTGTACATTATCA 476 481 170 Antisense
AAGAACCTTCAATTGCCAGTCAGCT 640 151 224 Antisense
ATATTGGACGAGTTTTGGCCCTTCG 567 17 281 Antisense
CCCTTCGTTGTCTTCAATCTGGAAT 292 259 299 Antisense
CTGGAATTCACTTTGCTATGCCTGG 466 241 317 Antisense
CAAACACACTTCTTCAAAGCTCTGG 591 191 376 Antisense
GTCTCACACTAAAAGAACCGGCCCA 591 469 410 Antisense
Sequence Source Affymetrix Proprietary Database